Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaattactattattactttgctttatgatggcaaattgataattattgaaaatttatgtattgacttgtcatatgtgattgtaagGTATCTGGTGAGCCAGGGTTGCATTAAGCCTCTCTGTGATCTGCTTGTTTGCCCGGACCCAAGAATCGTCACTGTCTGTTTAGAAGGACTTGAGAATATT

Basic information

species Glycine max
transcript GLYMA09G04430.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G04430.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 9
-------gtatgaattactattat-tactttgctttatgatggcaaattgataattattgaaaatttatgtattgacttg-tcatatgtgattgtaa----gGTATCTGGTGAGCCAGGGTTGCATTAAGCCTCTCTGTGATCTGCTTGTTTGCCCGGACCCAAGAATCGTCACTGTCTGTTTAGAAGGACTTGAGAATATT
        | |  ||| || | |  | | ||  | | |   | ||||    |  ||    | |  |  | | |||  |||  ||  | || | || |    |||| |||||||| || || ||||| |||||  | ||||| || ||||| ||||| || ||||| || || ||||||||||| |||||||| ||||| || 
gtatgttatcttgattcctgtgaagttccttcttatgtttggccaaaaccctcttttaacagacatagtattttggattgaccacctttgttggtgatatagGTACCTGGTGAGTCAAGGGTGCATAAAGCCATTGTGTGACCTCCTTGTATGCCCTGATCCAAGGATTGTGACTGTCTGTTTGGAAGGACTAGAGAACATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaaattgataattattgaaaatttatgtattgacttgtcatatgtgattgtaagGTATCTGGTGAGCCAGGGTTGCATTAAGCCTCTCTGTGATCTGCTTGTTTGCCCGGACCCAAGAATCGTCACTGTCTGTTTAGAAGGACTTGAGAATATT
                            tattgac  putative branch site (score: 2)
     ttgataattattgaaa  TA-rich tract