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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattaattgcatgttaaatgaattagacattcttaactatgccaaaaatcaagagtgaggtttgtaaaattaactctgcagGCCTTGCAACATATAAGACAAATAGCACAAGAATCTAGTGGAGAAATTCAGTACAGTGGGGGACGCCAGCCTGCTGTATTGAGAACATTTAGCCAGAGAC

Basic information

species Glycine max
transcript GLYMA09G02750.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02750.1 (Glycine max), 3'ss of exon 9
lower sequence: AT1G30490.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaagattaattgcatgttaaatgaattagacattcttaactatgccaaaaatcaagagtgaggtttgtaaaattaactctgcagGCCTTGCAACATATAAGACAAATAGCACAAGAATCTAGTGGAGAAATTCAGTACAGTGGGGGACGCCAGCCTGCTGTATTGAGAACATTTAGCCAGAGAC
      | | || ||| | ||     |||  ||  | | ||      |           |||| |||      |  ||  | |||||  ||  |||| |  | ||||| || |||||  ||||||||||| | ||||| ||||| |||||||||||||| || || || || || ||||||||||
-----gtaagttccatataaacc---ttatccacccgtgacctgattaggctctctttatgagttttact---tccacatttcagGCTCTGAGACATGTGCGCCAAATTGCTCAAGAGACTAGTGGAGAAGTCCAGTATAGTGGTGGACGCCAGCCTGCAGTTTTAAGGACTTTCAGCCAGAGAC

upper sequence: GLYMA09G02750.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv10s0003g04670.t01 (Vitis vinifera), 3'ss of exon 9
gtaaga--ttaattgcatgttaaatgaattagacattcttaactatgccaaaaatcaagag-tgaggtttgtaaaattaactc---tgcagGCCTTGCAACATATAAGACAAATAGCACAAGAATCTAGTGGAGAAATTCAGTACAGTGGGGGACGCCAGCCTGCTGTATTGAGAACATTTAGCCAGAGAC
||||||  |||      |||    | | ||   |    || |  |||       |||     | |  | | |   |||   |    ||||||| || |  || ||| ||||||| ||||||||| | |||||||||||||||||  ||||||| ||||| |||||||| || || || |||||||||||| 
gtaagaacttatggttgtgtggtgtcattttctctggttttatcatgttcttgttcattctcttatatctttttgatttttttgtatgcagGCATTACGGCACATACGACAAATTGCACAAGAAACCAGTGGAGAAATTCAGTATGGTGGGGGCCGCCAACCTGCTGTTTTAAGGACGTTTAGCCAGAGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattcttaactatgccaaaaatcaagagtgaggtttgtaaaattaactctgcagGCCTTGCAACATATAAGACAAATAGCACAAGAATCTAGTGGAGAAATTCAGTACAGTGGGGGACGCCAGCCTGCTGTATTGAGAACATTTAGCCAGAGAC
                                         aattaac  putative branch site (score: 2)
                                  tttgtaaaattaact  TA-rich tract