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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggctgctactgtttgtctatattataggttcctggctatatatttctcaaaggactcttgaatgggatgagagtggggggtggatgtgccaagtgtgaaaagttgtgaatatctaattttaattttggttgtctttgtagACTATCACACCTTTACGTGGACACTTGGATTTCTCATTTGCTTCTGCATGGCATCCTGATGGCCGCATATTTGCTACTGGGAACCAAGACAAAACATGTC

Basic information

species Glycine max
transcript GLYMA09G02070.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02070.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv00s1206g00020.t01 (Vitis vinifera), 3'ss of exon 5
gtgggctgctactgtttgtctatattataggttcctggctatatatttctcaaaggactcttgaatgggatgagagtggggggtggatgtgccaagtgtgaaaagttgtgaatatctaattttaattttggttgtctttgtagACTATCACACCTTTACGTGGACACTTGGATTTCTCATTTGCTTCTGCATGGCATCCTGATGGCCGCATATTTGCTACTGGGAACCAAGACAAAACATGTC
                                       ||  | ||||  ||      | | ||     |   ||| |||||          || |  |||| | |   |    || |||| || |||  ||     ||||||| ||||  |||||  ||||||||||||||||||||||||| |||||||||||||||||||||   |||||||| ||||||||||| ||||| || || |
--------------------------------------gtacctgtttcctaa------cataaaacttctcccagtagggggaa--------aaataagaaacggttcca----ctcatttgaagttt--tttatcatgtagACCATCAGGCCTTTGTGTGGACACTTGGATTTCTCATTTGCATCTGCATGGCATCCTGATGGCAATATATTTGCCACTGGGAACCAGGACAAGACTTGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208292782|gb|GE095570.1|GE095570
EST:     TTGTTGGAGACAACCCAAAAGGGTTACTGGTGGATTCTCAAACAGGAAAG                         ACTATCACACCTTTACGTGGACACTTGGATTTCTCATATGCATCTGCATGG
genomic: TTGTTGGAGACAACCCAAAAGGGTTACTGGTGGATTCTCAAACAGGAAAGgtgggctgct ... gtctttgtagACTATCACACCTTTACGTGGACACTTGGATTTCTCATTTGCTTCTGCATGG
EST: gi|193477489|gb|FK441442.1|FK441442
EST:     TTGTTGGAGACAACCCAAAAGGGTTACTGGTGGATTCTCAAACAGGAAAG                         ACTATCACACCTTTACGTGGACACTTGGATTTCTCATTTGCATCTGCATGG
genomic: TTGTTGGAGACAACCCAAAAGGGTTACTGGTGGATTCTCAAACAGGAAAGgtgggctgct ... gtctttgtagACTATCACACCTTTACGTGGACACTTGGATTTCTCATTTGCTTCTGCATGG
EST: gi|193469975|gb|FK437316.1|FK437316
EST:     TTGTTGGAGACAACCCAAAAGGGTTACTGGTGGATTCTCAAACAGGAAAG                         ACTATCACACCTTTACGTGGACACTTGGATTTCTCATTTGCATCTGCATGG
genomic: TTGTTGGAGACAACCCAAAAGGGTTACTGGTGGATTCTCAAACAGGAAAGgtgggctgct ... gtctttgtagACTATCACACCTTTACGTGGACACTTGGATTTCTCATTTGCTTCTGCATGG
EST: gi|193324907|gb|FK288105.1|FK288105
EST:     TTGTTGGAGACAACCCAAAAGGGTTACTGGTGGATTCTCAAACAGGAAAG                         ACTATCACACCTTTACGTGGACACTTGGATTTCTCATTTGCATCTGCATGG
genomic: TTGTTGGAGACAACCCAAAAGGGTTACTGGTGGATTCTCAAACAGGAAAGgtgggctgct ... gtctttgtagACTATCACACCTTTACGTGGACACTTGGATTTCTCATTTGCTTCTGCATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgccaagtgtgaaaagttgtgaatatctaattttaattttggttgtctttgtagACTATCACACCTTTACGTGGACACTTGGATTTCTCATTTGCTTCTGCATGGCATCCTGATGGCCGCATATTTGCTACTGGGAACCAAGACAAAACATGTC
                               ttttaat  putative branch site (score: 3)
                                           ttgtcttt  putative PPT
            aaaagttgtgaatatc  TA-rich tract