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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctttcaaaccatcaacctaatgttcttaaagcaacatgcagttttgctctctcttgacataaacaaaatatctaacttgatctctaaatctgtagGGAGATAAAAATATCATAAAATTTGATGGTGATCACAACTCCTCTCGACCACAGTTCTTTTATGATTCAATTTCCATTTTCTTCTACAATGTGCTCCGCC

Basic information

species Glycine max
transcript GLYMA09G02050.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02050.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os02g10440.1 (Oryza sativa), 3'ss of exon 8
----------------------------gtattctttcaaaccatcaacctaatgttcttaaagc-aacatgcagtttt--gctctctcttgacataaacaaaatatctaacttgatctctaaatctgt---------agGGAGATAAAAATATCATAAAATTTGATGGTGATCACAACTCCTCTCGACCACAGTTCTTTTATGATTCAATTTCCATTTTCTTCTACAATGTGCTCCGCC
                             |     |  ||| ||   |  ||||      |  || ||    | |||    |||  ||  |||   | |||  ||   |   || |  |  ||   |||         |||| ||||||| ||| ||||||||||| ||||||||||||||| |  |||| || |  | |||||||||| |||| || |||||||| |||    | |  |
gtaatgcataatgtagtttgttttattaatgccactcaaaatcaaataaataatacataaatcgctaattgactgttcctggcttcctgctgaagaatacattattatttgtttaaaattaaatcatgtttattgtacagGGGGATAAAAGTATAATAAAATTTGAGGGTGATCACAACTCCCCAAGACCTCAATCATATTATGATTCAGTTTCAATGTTCTTCTATAATACTTTGCATC

upper sequence: GLYMA09G02050.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G081642_T04 (Zea mays), 3'ss of exon 8
gtattctttcaaaccatcaacctaatgttcttaaagcaacatgcagttttgc---tctctcttgacataaacaaaatatctaact--tgatctctaaatctgtagGGAGATAAAAATATCATAAAATTTGATGGTGATCACAACTCCTCTCGACCACAGTTCTTTTATGATTCAATTTCCATTTTCTTCTACAATGTGCTCCGCC
   | ||||  ||| |  ||| |   | |    |  | |       |  |||   |||  || | |||   |  |||   |  ||  |   || |   | || |||| ||||||||||| || ||||||||||||||||| || ||  |  |||| || |  | |||||||||| |||| || |||||||||||     | |  |
---tccttt--aacaaataacatggagattggtagtcgattatttctgctgcatatcttgctagccattttcttaattattgcctcatagcctgtttgtgtgcagGGGGATAAAAATATAATTAAATTTGATGGTGATCATAATTCTCCAAGACCTCAATCATATTATGATTCAGTTTCTATATTCTTCTACAAATCTTTGCATC

upper sequence: GLYMA09G02050.1 (Glycine max), 3'ss of exon 9
lower sequence: AT4G17150.2 (Arabidopsis thaliana), 3'ss of exon 8
gtattctttca-aaccatcaacctaatgttcttaaagcaacatgcagttttgctctctcttgacataaacaaaatatctaacttgatctctaaatctgtagGGAGATAAAAATATCATAAAATTTGATGGTGATCACAACTCCTCTCGACCACAGTTCTTTTATGATTCAATTTCCATTTTCTTCTACAATGTGCTCCGCC
   | ||| || ||         | ||||||   |||||  ||  |   ||  ||  | ||          |  || ||| |||   ||  |||| || ||||||| ||||||||||| || |||||||||||||||||||| || || || ||||  | |||||||||| | |   | |||||||||||||| || ||||
--gtacttacataattgcggtttttatgttc---aagca-tatcaatcctttttcattttt----------atgtacctatctt---ctggaaatttgcagGGAGACAAAAATATCATCAAGTTTGATGGTGATCACAACTCTTCGCGCCCGCAGTCTTATTATGATTCAGTATTAGTATTCTTCTACAATGTTCTTCGCC

upper sequence: GLYMA09G02050.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv00s0475g00050.t01 (Vitis vinifera), 3'ss of exon 2
gtattctttcaaaccatcaacctaatgttcttaaagcaacatgcagttttgctctctcttgacataaacaaaatatctaacttgatctctaa-atctgtagGGAGATAAAAATATCATAAAATTTGATGGTGATCACAACTCCTCTCGACCACAGTTCTTTTATGATTCAATTTCCATTTTCTTCTACAATGTGCTCCGCC
||||| | |||  |      |||  || |   |    ||   |  |  ||||  | |   | | | |  ||||| | || | |  | | ||  || || |||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||| | |||||||||| ||||||| |||||||||||||| || |  |
gtattatgtcattctggaggccttgtggttagattttaaagcgaggcattgcaat-tggcgtctttatgaaaat-tttaccatattgtttattatgtgcagGGAGATAAGAATATTATAAAGTTTGATGGTGATCACAACTCTTCTCGACCACAGTTTTATTATGATTCAGTTTCCATCTTCTTCTACAATGTTCTACATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttgctctctcttgacataaacaaaatatctaacttgatctctaaatctgtagGGAGATAAAAATATCATAAAATTTGATGGTGATCACAACTCCTCTCGACCACAGTTCTTTTATGATTCAATTTCCATTTTCTTCTACAATGTGCTCCGCC
                  ataaacaaaatatcta  TA-rich tract