1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaaacccgaagatattgtaccttctgtcattagcctagaggctttaacatatttaatgttgagtgttctgtaatttcaattttattgaagagtttcaatttttcctttagCATGGGTATTGAGAGTGTGGTGGATAAGAATGAAAGAAAATCATCTGGTAGCATTCGGGATGCTGGTTGTTCTGCATGTGAGATGGCTGTTATTTGGATG
species | Glycine max |
transcript | GLYMA09G00810.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAG CATGGGTATTGAGAGTGTGGTGGATAAGAATGAAAGAAAATCATCTGGTAGEST: gi|51335675|gb|CO979541.1|CO979541
genomic: ATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAGgtaaacccga ... tttcctttagCATGGGTATTGAGAGTGTGGTGGATAAGAATGAAAGAAAATCATCTGGTAG
EST: ATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAG CATGGGTATTGAGAGTGTGGTGGATAAGAATGAAAGAAAATCATCTGGTAGEST: gi|298180046|gb|HO025261.1|HO025261
genomic: ATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAGgtaaacccga ... tttcctttagCATGGGTATTGAGAGTGTGGTGGATAAGAATGAAAGAAAATCATCTGGTAG
EST: ATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAG CATGGGTATTGAGAGTGTGGTGGATAAGAATGAAGGAAAATCATCTGGTAGEST: gi|24136383|gb|BU926893.1|BU926893
genomic: ATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAGgtaaacccga ... tttcctttagCATGGGTATTGAGAGTGTGGTGGATAAGAATGAAAGAAAATCATCTGGTAG
EST: ATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAG CATGGGTATTGAGAGTGTGGTGGATAAGAATGAAAGAAAATCATCTGGTAG
genomic: ATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAGgtaaacccga ... tttcctttagCATGGGTATTGAGAGTGTGGTGGATAAGAATGAAAGAAAATCATCTGGTAG
atgttgagtgttctgtaatttcaattttattgaagagtttcaatttttcctttagCATGGGTATTGAGAGTGTGGTGGATAAGAATGAAAGAAAATCATCTGGTAGCATTCGGGATGCTGGTTGTTCTGCATGTGAGATGGCTGTTATTTGGATG
atttaat putative branch site (score: 4)
tttcaatttttccttt putative PPT
ttctgtaatttcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacccgaagatattgtaccttctgtcattagcctagaggctttaacatatttaatgttgagtgttctgtaatttcaattttattgaagagtttcaatttttcctttagCATGGGTATTGAGAGTGTGGTGGATAAGAATGAAAGAAAATCATCTGGTAGCATTCGGGATGCTGGTTGTTCTGCATGTGAGATGGCTGTTATTTGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT