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gtaatctaaaatagattatacatttcactttctacatgttgatgcacctgctgatggtactgaaatcttactgtagGCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAGCAGGCCAAGACCTTGAAGGTTGCCTGCAATCTTAACAATGCTGCTTGCA
species | Glycine max |
transcript | GLYMA08G46090.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAAGATATGAAAAG GCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAGEST: gi|193717162|gb|FK655588.1|FK655588
genomic: TGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAAGATATGAAAAGgtaatctaaa ... cttactgtagGCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAG
EST: TGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAAGATATGAAAAG GCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAGEST: gi|193331359|gb|FK296739.1|FK296739
genomic: TGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAAGATATGAAAAGgtaatctaaa ... cttactgtagGCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAG
EST: TGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAAGATATGAAAAG GCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAGEST: gi|193665940|gb|FK611327.1|FK611327
genomic: TGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAAGATATGAAAAGgtaatctaaa ... cttactgtagGCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAG
EST: TGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAAGATATGAAAAG GCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAGEST: gi|193386205|gb|FK351665.1|FK351665
genomic: TGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAAGATATGAAAAGgtaatctaaa ... cttactgtagGCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAG
EST: TGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAAGATATGAAAAG GCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAGEST: gi|193429516|gb|FK394464.1|FK394464
genomic: TGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAAGATATGAAAAGgtaatctaaa ... cttactgtagGCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAG
EST: TGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAAGATATGAAAAG GCTGTAAAGTACATAGAATATGGTTCCTCATTCGGTGAGGAGGAGAAAAAGEST: gi|208301049|gb|GE098532.1|GE098532
genomic: TGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAAGATATGAAAAGgtaatctaaa ... cttactgtagGCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAG
EST: TGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAGGATATGAAAAG GCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGEST: gi|207808632|gb|GD780577.1|GD780577
genomic: TGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAAGATATGAAAAGgtaatctaaa ... cttactgtagGCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGG
EST: TGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAAGATATGAAAAG GCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAGEST: gi|193566984|gb|FK525085.1|FK525085
genomic: TGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAAGATATGAAAAGgtaatctaaa ... cttactgtagGCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAG
EST: TGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAAGATATGAAAAG GCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAA
genomic: TGTTGTTTAAAGCTGGTAAGCATGCAAGAGCTTCCAAAAGATATGAAAAGgtaatctaaa ... cttactgtagGCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAA-
atttcactttctacatgttgatgcacctgctgatggtactgaaatcttactgtagGCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAGCAGGCCAAGACCTTGAAGGTTGCCTGCAATCTTAACAATGCTGCTTGCA
atcttac putative branch site (score: 3)
tcttact CT-rich tract
aaatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatctaaaatagattatacatttcactttctacatgttgatgcacctgctgatggtactgaaatcttactgtagGCTGTAAAGTACATAGAATATGATTCCTCATTCGGTGAGGAGGAGAAAAAGCAGGCCAAGACCTTGAAGGTTGCCTGCAATCTTAACAATGCTGCTTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT