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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtattcaaagataaaagaatgaaaatgaaaattatgctattaggaacccaaaacatgtagacaatgacatatgttaacattgtgacattaatttattatgcatttgcagGAAGGAACTGCCAATTACTTCAAAGGACTACTGCTTATTCTTTGCTATCTGATAGTGGCTGCCAGTTTTTATGTACATTTAGATTCCTCTCAATAA

Basic information

species Glycine max
transcript GLYMA08G44920.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G44920.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os02g04630.1 (Oryza sativa), 3'ss of exon 10
gtttgtattcaaagataaaagaat-gaaaatgaaaattatgctattaggaacccaaaacatgtagacaatgacatatgttaacattgtgacattaatttattatgcatttgcagGAAGGAACTGCCAATTACTTCAAAGGACTACTGCTTATTCTTTGCTATCTGATAGTGGCTGCCAGTTTTTATGTACATTTAGATTCC--TCTCAATAA
              ||||||  || |   |   | |  || || |||  |   |||||   ||      | ||||   || | |  ||    ||||   || |  || || ||||| || ||| | ||||   | |||||| |  ||||  |||| || ||||||||||| |||||||||||||||||||||   ||| |   |  |||   
-----------gtaataaaatcattgtgcaaagagagcattcttttaaaa---caaaatgagtttgatttcacatgattttaaaacgttcttttaa---atcacacactttcagGATGGGACTTCAAATTGTGTGAAAGGATTGATGCTATTTCTCTGTTATCTGATAGTAGCTGCCAGTTTTTATGTACATGCTGATCCAAATTCCAAGG-

upper sequence: GLYMA08G44920.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G010779_T01 (Zea mays), 3'ss of exon 11
gtttgtattcaaagataaaagaatgaaaatgaaaattatgctattaggaacccaaaacatgtagacaatgacatatgttaacattgtgacattaatttattatgcat-ttgcagGAAGGAACTGCCAATTACTTCAAAGGACTACTGCTTATTCTTTGCTATCTGATAGTGGCTGCCAGTTTTTATGTACATTTAGATTC--CTCTCAATAA
                    | |    | |||||   |  |   |  | | | |   |   |  ||  |  || |  ||    |  | |  ||  ||| || | ||  || ||||| || ||  | || |  |||||||| ||  |||| ||||| ||||| ||||||||||||||||||||||||||  ||   ||| |   | || ||  
--------------------gtactggagtgaaataaacacagctgaggaac-agtgctcctccactcttgca-agatttgtttgcttaagtt--tttcttgttcacgttacagGATGGGACCTCGAACTGTTTCAAAGGGCTGATGCTGATTCTCTGCTACCTGATAGTGGCTGCCAGTTTTTATGTGTATGCTGATCCAAATATCGATG-

upper sequence: GLYMA08G44920.1 (Glycine max), 3'ss of exon 9
lower sequence: AT1G55720.1 (Arabidopsis thaliana), 3'ss of exon 10
gtttgtattcaaagataaaagaatgaaaatgaaaattatgctattaggaacccaaaacatgtagacaatgacatatgttaacattgtgacattaatttat-tatgcatt--tgcagGAAGGAACTGCCAATTACTTCAAAGGACTACTGCTTATTCTTTGCTATCTGATAGTGGCTGCCAGTTTTTATGTACATTTAGATTCCTCTCAATAA
|||  | || ||    |  |  |    ||||   ||| |    | | || | | || || | | || |||   | |       || |  ||| ||  | | | ||   |  |||||||||| ||  | |||||||||||| || |  |||| |||||||||||| ||||||| ||||| ||||| | ||||||   |||| |   ||||   
gttaatcttgaagctaattatgaaaccaatgttgattttatcttcatgatcgctaatcacg-aaaccatgcattcttgagtttttcttgcatgaagctgtgtttgttgtaatgcagGAAGGGACATCGAATTACTTCAAAAGATTGATGCTCATTCTTTGCTATTTGATAGTCGCTGCTAGTTTCTTTGTACACGAAGATCCTCATCAAG--

upper sequence: GLYMA08G44920.1 (Glycine max), 3'ss of exon 9
lower sequence: AT1G55730.1 (Arabidopsis thaliana), 3'ss of exon 11
gtttgtattcaaagataaaagaatgaaaatgaaaattatgctattaggaacccaaaacatgtagacaatgacatatgttaacattgtgacatta-atttattatgcatttgcagGAAGGAACTGCCAATTACTTCAAAGGACTACTGCTTATTCTTTGCTATCTGATAGTGGCTGCCAGTTTTTATGTACATTTAGATTCCTCTCAATAA
                     |||    | |  ||||| |  |  |     | |  | || |      | | |  ||||||     || | ||   | |  | |   | |||||||||||||  | ||||||||||||||| |  |||| |||||||||||| ||||||| || || ||||| | ||||||   |||| |   ||||   
------------------gtaaatcttgaagctaattacgaaaccaatc-tcgagtatatctctctcttcaaagttgttaa----atgtctttgtgtgtggtgtttttatgcagGAAGGAACATCGAATTACTTCAAAGGATTGATGCTCATTCTTTGCTATTTGATAGTCGCCGCTAGTTTCTTTGTACACGAAGATCCTCATCAAG--

upper sequence: GLYMA08G44920.1 (Glycine max), 3'ss of exon 9
lower sequence: AT3G13320.1 (Arabidopsis thaliana), 3'ss of exon 11
gtttgtattcaaagataaaagaatgaaaatgaaaattatgctattaggaacccaaaacatgtagacaatgacatatgttaacattgtgac-attaatttattatgcatttgcagGAAGGAACTGCCAATTACTTCAAAGGACTACTGCTTATTCTTTGCTATCTGATAGTGGCTGCCAGTTTTTATGTACATTTAGATTCCTCTCAATAA
                               |||||  |    |    | | |     ||   || || || |  |   ||  || | ||   | || | |  |   |  |||||||||  |  | ||||||||||||||| |  |||| |||||||| ||| ||||||| ||||||||||| | ||||||   |||| |    |||   
-------------------------gtggctaaaatccttaagtctaaatcactgtcgataatgaaaa-gataattccaaaatttttaactgatgatctctgttatgtacgcagGAAGGGTCATCGAATTACTTCAAAGGATTGATGCTGATTCTTTGTTATTTGATAGTAGCTGCCAGTTTCTTTGTACACGAAGATCCTCACCAAG--

upper sequence: GLYMA08G44920.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv19s0015g01320.t01 (Vitis vinifera), 3'ss of exon 10
gtttgtattcaaagataaaagaatgaaaatgaaaattatgctattaggaaccca-aaacatgtag-acaatgacatatgttaacattgtgacattaatttat-tatgc----------atttgcagGAAGGAACTGCCAATTACTTCAAAGGACTACTGCTTATTCTTTGCTATCTGATAGTGGCTGCCAGTTTTTATGTACATTTAGATTCCTCTC-AATAA
|||||||||||| || |  |  |   |  |  | | | || || | |   |    | | ||  |  |  ||  |     ||     | | ||| ||| |||  ||| |           |||||||||||| ||| | |||||||| ||||||||| |||| |||||||||||||| ||||| || || ||||| | ||||||| | ||| |  ||  | || 
gtttgtattcaatga-aggaacacagatctatatactttgatagtggtgtcttgtagatattcatcattatttctctgtttggttatttcacaataacttacatattcctcttgttttgtttgcagGAAGGCACTTCTAATTACTTTAAAGGACTAATGCTCATTCTTTGCTATCTAATAGTTGCAGCAAGTTTCTTTGTACATGTCGATCCTACTTTAGTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtagacaatgacatatgttaacattgtgacattaatttattatgcatttgcagGAAGGAACTGCCAATTACTTCAAAGGACTACTGCTTATTCTTTGCTATCTGATAGTGGCTGCCAGTTTTTATGTACATTTAGATTCCTCTCAATAA
                        attgtgacattaattt  TA-rich tract