1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agaatttgttatgatgttttctgatcaaaaccaaaagatattccttttggcacatttcctaggccacaaattttataacataccaaattattcttgtcagGTATCCTTGAACTGGCTGGTAGCACAAGGCAATGTTGTCCCAATTCCAGGAGCCAAGACAGCAGAACAAGCTGAGGAATTCATAGGTGCACTTGGCTGGA
species | Glycine max |
transcript | GLYMA08G41630.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAAACTCCAACACAG GTATCCTTGAACTGGCTGGTAGCACAAGGCAATGTTGTCCCAATTCCAGGAEST: gi|31460143|gb|CD402531.1|CD402531
genomic: TGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAAACTCCAACACAGgttcatgctg ... ttcttgtcagGTATCCTTGAACTGGCTGGTAGCACAAGGCAATGTTGTCCCAATTCCAGGA
EST: TGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAAACTCCAACACAG GTATCCTTGAACTGGCTGGTAGCACAAGGCAATGTTGTCCCAATTCCAGGAEST: gi|14205390|gb|BG839068.1|BG839068
genomic: TGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAAACTCCAACACAGgttcatgctg ... ttcttgtcagGTATCCTTGAACTGGCTGGTAGCACAAGGCAATGTTGTCCCAATTCCAGGA
EST: TGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAAACTCCAACACAG GTATCCTTGAACTGGCTGGTAGCACAAGGCAATGTTGTCCCAATTCCAGGAEST: gi|105631910|gb|DW246240.1|DW246240
genomic: TGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAAACTCCAACACAGgttcatgctg ... ttcttgtcagGTATCCTTGAACTGGCTGGTAGCACAAGGCAATGTTGTCCCAATTCCAGGA
EST: TGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAAACCCCAACACAG GTATCCTTGAACTGGCTGGTAGCACAAGGCAATGTTGTCCCAATTCCAGGAEST: gi|7690984|gb|AW759119.1|AW759119
genomic: TGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAAACTCCAACACAGgttcatgctg ... ttcttgtcagGTATCCTTGAACTGGCTGGTAGCACAAGGCAATGTTGTCCCAATTCCAGGA
EST: TGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAAACTCCAACACAG GTATCCTTGAACTGGCTGGTAGCACAAGGCAATGTTGTCCCAATTCCAGGAEST: gi|22928755|gb|BU545894.1|BU545894
genomic: TGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAAACTCCAACACAGgttcatgctg ... ttcttgtcagGTATCCTTGAACTGGCTGGTAGCACAAGGCAATGTTGTCCCAATTCCAGGA
EST: TGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAAACTCCAACACAG GTATCCTTGAACTGGCTGGTAGCACAAGGCAATGTTGTCCCAATTCCAGGA
genomic: TGAACAAGATCAGTGAAATAGGAGAGAAGTATGATAAAACTCCAACACAGgttcatgctg ... ttcttgtcagGTATCCTTGAACTGGCTGGTAGCACAAGGCAATGTTGTCCCAATTCCAGGA
tttggcacatttcctaggccacaaattttataacataccaaattattcttgtcagGTATCCTTGAACTGGCTGGTAGCACAAGGCAATGTTGTCCCAATTCCAGGAGCCAAGACAGCAGAACAAGCTGAGGAATTCATAGGTGCACTTGGCTGGA
ttataac putative branch site (score: 2)
ttattctt putative PPT
aaattttataacatac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaatttgttatgatgttttctgatcaaaaccaaaagatattccttttggcacatttcctaggccacaaattttataacataccaaattattcttgtcagGTATCCTTGAACTGGCTGGTAGCACAAGGCAATGTTGTCCCAATTCCAGGAGCCAAGACAGCAGAACAAGCTGAGGAATTCATAGGTGCACTTGGCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - tgttatg
- - - - - - - - - - - - -caaaacc
- - - - - - - - - - - - - - - - aaaagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catacca