1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctgcataaatttgggacttgtcttctagattgcataaattaagcctgcatctctgtatgtggaagttagacgatgttgatttcagtttatgatgttgcagGAATTATCAGAACATCTTGGAATTCGGCTGCTAAATGAGCGGTTAAATGATCCGACGATGCAAGAATCTTTTGAATCCATATTTCCAAAAGATAATCCAA
species | Glycine max |
transcript | GLYMA08G41440.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTCTTCACGTATATTTATTAAGATTCTCTTCCAG GAATTATCAGAACATCTTGGAATTCGGCTGCTAAATGAGCGGTTAAATGATEST: gi|51335450|gb|CO979316.1|CO979316
genomic: CTTCTTCACGTATATTTATTAAGATTCTCTTCCAGgtactctttc ... gatgttgcagGAATTATCAGAACATCTTGGAATTCGGCTGCTAAATGAGCGGTTAAATGAT
EST: AAGAGGACACAACTTCTTCTTCACGTATATTTATTAAGATTCTCTTCCAG GAATTATCAGAACATCTTGGAATTCGGCTGCTAAATGAGCGGTTAAATGAT
genomic: AAGAGGACACAACTTCTTCTTCACGTATATTTATTAAGATTCTCTTCCAGgtactctttc ... gatgttgcagGAATTATCAGAACATCTTGGAATTCGGCTGCTAAATGAGCGGTTAAATGAT
tgcatctctgtatgtggaagttagacgatgttgatttcagtttatgatgttgcagGAATTATCAGAACATCTTGGAATTCGGCTGCTAAATGAGCGGTTAAATGATCCGACGATGCAAGAATCTTTTGAATCCATATTTCCAAAAGATAATCCAA
tgttgat putative branch site (score: 4)
tttatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgcataaatttgggacttgtcttctagattgcataaattaagcctgcatctctgtatgtggaagttagacgatgttgatttcagtttatgatgttgcagGAATTATCAGAACATCTTGGAATTCGGCTGCTAAATGAGCGGTTAAATGATCCGACGATGCAAGAATCTTTTGAATCCATATTTCCAAAAGATAATCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA