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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaatattgttctctaatttttttcatcctatttggaaaacaagaactggcttctgaaattatttgtgttcttgtctgtcatcaccttttctaattaatgaaaattatgatgcagATATGATCTGAATGTTGATTTGTTGGACGTCCATGCAGATAAGAGCACATTCCATAGATTTGACAAATTCAACCTTAAGTATAATCCTTGTGGACAGAGC

Basic information

species Glycine max
transcript GLYMA08G40690.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G40690.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv01s0026g01480.t01 (Vitis vinifera), 3'ss of exon 8
gtatgcaatattgttctctaatttttttcatcctatttggaaaacaagaactggcttctgaaattatttgtgttcttgtctgtcatcaccttttctaattaatgaaaattatgatgcagATATGATCTGAATGTTGATTTGTTGGACGTCCATGCAGATAAGAGCACATTCCATAGATTTGACAAATTCAACCTTAAGTATAATCCTTGTGGACAGAGC
|||| |  | ||||        ||| || ||  |  |||            | | ||| || ||      ||| ||  |||    |||  ||| |           ||||     ||||  ||||||||||||||||| | ||||| || ||||| || ||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||||| |||
gtattcgttcttgt-----ggatttgttgatttttcttg-----------tttgtttcggatatagaaaatgt-ctcttctcaactcatatttgc-----------aattgcatggcagGCATGATCTGAATGTTGATCTATTGGATGTGCATGCTGACAAGAGTACCTTCCATAGATTTGACAAGTTCAATCTTAAGTATAATCCTTGCGGACAAAGC

upper sequence: GLYMA08G40690.1 (Glycine max), 3'ss of exon 9
lower sequence: PP1S77_89V6.1 (Physcomitrella patens), 3'ss of exon 8
gtatgcaatattgttctctaatttttttcatcctatttggaaaacaagaactggcttctgaaattatttgtgttcttgtctgtcatcaccttttcta-attaatgaa--aattatgatgcagATATGATCTGAATGTTGATTTGTTGGACGTCCATGCAGATAAGAGCACATTCCATAGATTTGACAAATTCAACCTTAAGTATAATCCTTGTGGACAGAGC
                  | | ||| |  ||| | |||  |||| || |  |   ||   |  ||| |  ||||       || |   | | | ||  |||  |        ||   | ||| |||||||| ||||| |||||| |||| |||||||| || ||||  ||||| ||  |||| ||||| |||||| | ||||||||||||||||| ||||| 
------------------tcaatttgtaaatcatttttccaaaataacacat--ttttataccttaatgctgtta--agtggttaatgcgtgtactgtattggtattttgtgtacatttcagTTATGATCTCAATGTCGATTTGCTGGATGTCCATGCTGACAAGAATACATTTCACCGATTCGACAAGTTCAACTTGAAGTATAATCCTTGTGGCCAGAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttgtgttcttgtctgtcatcaccttttctaattaatgaaaattatgatgcagATATGATCTGAATGTTGATTTGTTGGACGTCCATGCAGATAAGAGCACATTCCATAGATTTGACAAATTCAACCTTAAGTATAATCCTTGTGGACAGAGC
                          ttttctaattaatgaa  TA-rich tract