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...ctagtctcacatcctttgtttcatttgtttaaaactccatgttcaaaatgaagtcattatttttgttttatacttattattggattgttcttatctacagTATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGATGCAGATGTGAAGGTTAAGGATTTTGACCCTGAGGATGATGAGTAGCCA
species | Glycine max |
transcript | GLYMA08G39880.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAG TATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGAEST: gi|209724732|gb|BW651475.1|BW651475
genomic: AACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAGgtacactctt ... ttatctacagTATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGA
EST: AACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAG TATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGAEST: gi|209704470|gb|BW680626.1|BW680626
genomic: AACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAGgtacactctt ... ttatctacagTATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGA
EST: TTAGACTTAAGGAAGGAAAAAAG TATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGAEST: gi|192306146|gb|FG996578.1|FG996578
genomic: TTAGACTTAAGGAAGGAAAAAAGgtacactctt ... ttatctacagTATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGA
EST: AACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAG TATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGAEST: gi|209725308|gb|BW651502.1|BW651502
genomic: AACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAGgtacactctt ... ttatctacagTATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGA
EST: ATTAGACTTAAGGAAGGAAAAAAG TATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGAEST: gi|51341249|gb|CO982566.1|CO982566
genomic: ATTAGACTTAAGGAAGGAAAAAAGgtacactctt ... ttatctacagTATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGA
EST: AACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAG TATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGAEST: gi|209716788|gb|BW665466.1|BW665466
genomic: AACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAGgtacactctt ... ttatctacagTATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGA
EST: AACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAG TATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGAEST: gi|12690127|gb|BG156463.1|BG156463
genomic: AACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAGgtacactctt ... ttatctacagTATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGA
EST: AACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAG TATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGAEST: gi|192297924|gb|FG993203.1|FG993203
genomic: AACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAGgtacactctt ... ttatctacagTATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGA
EST: AACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAG TATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGAEST: gi|9903086|gb|BE612054.1|BE612054
genomic: AACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAGgtacactctt ... ttatctacagTATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGA
EST: AACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAG TATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGAEST: gi|193415423|gb|FK381027.1|FK381027
genomic: AACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAGgtacactctt ... ttatctacagTATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGA
EST: AACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAA-G TATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGA
genomic: AACTATAGCATGGTGAGTTTTATACCATTAGACTTAAGGAAGGAAAAAAGgtacactctt ... ttatctacagTATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGA
aaatgaagtcattatttttgttttatacttattattggattgttcttatctacagTATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGATGCAGATGTGAAGGTTAAGGATTTTGACCCTGAGGATGATGAGTAGCCA
ttcttatct CT-rich tract
attatttttgttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagtctcacatcctttgtttcatttgtttaaaactccatgttcaaaatgaagtcattatttttgttttatacttattattggattgttcttatctacagTATACAATATGTACTGGCCCAAATTGACAACTGCATTCAATATGGAGAAGATGCAGATGTGAAGGTTAAGGATTTTGACCCTGAGGATGATGAGTAGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG