1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctacaggcatattcactgtgtcagtagttatattttttaaatgttgggattatttgctagtttgaacaaactatatatcttacaatatattacattttagGTTAGGAACACTAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGCTAGTACCTGGCTCAAATTGTTTACCTTTAGCTGGCTCAGAGGCCAAGT
species | Glycine max |
transcript | GLYMA08G38990.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAATGGAAGCAATGCGTGATTGTGACCCTTTATCTGCTCGTCACTGGATT GTTAGGAACACTAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGEST: gi|58017921|gb|CX704663.1|CX704663
genomic: AAATGGAAGCAATGCGTGATTGTGACCCTTTATCTGCTCGTCACTGGATTgtaagttctt ... tacattttagGTTAGGAACACTAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAG
EST: AAATGGAAGCAATGCGTGATTGTGACCCTTTATCTGCTCGTCACTGGATT GTTAGGAACACTAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAG
genomic: AAATGGAAGCAATGCGTGATTGTGACCCTTTATCTGCTCGTCACTGGATTgtaagttctt ... tacattttagGTTAGGAACACTAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAG
gggattatttgctagtttgaacaaactatatatcttacaatatattacattttagGTTAGGAACACTAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGCTAGTACCTGGCTCAAATTGTTTACCTTTAGCTGGCTCAGAGGCCAAGT
atcttac putative branch site (score: 3)
aacaaactatatatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctacaggcatattcactgtgtcagtagttatattttttaaatgttgggattatttgctagtttgaacaaactatatatcttacaatatattacattttagGTTAGGAACACTAGGACTGTAAACCGAACTGGGCATCTAACTGGTTACAAGCTAGTACCTGGCTCAAATTGTTTACCTTTAGCTGGCTCAGAGGCCAAGT
- acaggca
- - - - - - - -ctgtgtc
- - - - - - - - - - - - - - - - - - - - -tgttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaaac