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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggttactaaattgttgagctagttaactaatccttttactatgcctatgcattggaggggcagggttgttcttgtttatgttgccatttatatgctaagtagtgttattatctattacagGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCG

Basic information

species Glycine max
transcript GLYMA08G35510.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G35510.1 (Glycine max), 3'ss of exon 9
lower sequence: AT3G54230.2 (Arabidopsis thaliana), 3'ss of exon 11
gttaggttactaaattgttgagctagttaactaatccttttactatgcctatgcattggaggggcagggttgttcttgtttatgttgccatttatatgctaagtagtgttattatctattacagGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCG
                     | ||   ||  || ||||||    |   | |  |||             | || |  ||||| |  |  || |  || |        ||      | ||  ||||||| ||||||||||||||||| || |||||||| ||| | ||||||||||| || || || ||||||
---------------------gttaacaaa--aacccttttggattcgttgtctattaaga---------tattgtactttatatgtcagttgacctggttttcctctttccgccattttgtagGATCTTCGTCTTGTGAGAGACAAATTCACTCATGTTTCACGAGGATTTGCATTCGTGCATTTCTATTCG

upper sequence: GLYMA08G35510.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv02s0012g00870.t01 (Vitis vinifera), 3'ss of exon 9
gttaggttactaaattgttgagctagttaactaatccttttactatgcctatgcattggaggggcagggttgttcttgtttatgttgccatttatatgctaagtagtgttattatctattacagGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCG
                                      |  | | ||  |||   |||      | || ||    || |  || ||   | || |   ||   || | ||| |     || |||||||| || |||||  |||| || || |||||||| ||||||||||||||||||||||| ||| |||||
----------------------------------gtactcaagtgtggttat--tttgttaatactggttttcaattttacatcttctaagttttt--cttgctaattttaat-----ttgcagGATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCATTTGTACATTTTCATTCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttcttgtttatgttgccatttatatgctaagtagtgttattatctattacagGATCTGCGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGATTTGCATTTGTACACTTTTATTCG
                                     tgttattatctatta  TA-rich tract