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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttattggtttatataacacgcacatatacagtcatatgtgaatgaaatttgtttgtgctcttgttatgtacatcaatgttgacttttgattaggaatttaaatttgtaaatcgatgcttaaatgcagGGGTTCATGATTCATATTGGACACATGCGTGTGATGTTGATGAAATGAACAGGATACTCAGGGAAAAGTTTGTTGAACTCTATGATGCTCCAATATTGGA

Basic information

species Glycine max
transcript GLYMA08G32320.6
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G32320.6 (Glycine max), 3'ss of exon 9
lower sequence: PP1S256_41V6.1 (Physcomitrella patens), 3'ss of exon 17
--------------------------gtgcttattggtttatataacacgcacatatacagt---catatgtgaatgaaatttgtttgtg----ctcttgtta------tgtacatcaatgttgacttttgattaggaatttaaatttgtaaatcgatgcttaaatgcagGGGTTCATGATTCATATTGGACACATGCGTGTGATGTTGATGAAATGAACAGGATACTCAGGGAAAAGTTTGTTGAACTCTATGATGCTCCAATATTGGA
                           ||   |||   ||||    ||  |  |||| ||||       | || ||  | ||| ||  ||      || || |      |    || |  | |    |  | | |  |  ||| || | |   | | |   ||| |||||| || ||||||||||| |||||||||||  |||| || ||  ||||||||||  | ||| | || |||||||||||||||||   |   ||| | |||||
gtacataattatgtatacatagcttgatgtgcattctattattctgcattcg-atatgcagtaggtgcttatggatttattttcttcatgaacatcctcgtaaattcttttcttattacagcttttctccgttcacaagcttacatgtttttgttg-tttgtaactgcagGTGTGCATGATTCATACTGGACACATGCAGGTGACGTAGAGCAAATGAACAGCCTGCTCCGTGAGAAGTTTGTTGAACTCTACAGTCAACCAGTTTTGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13311229|gb|BG404943.1|BG404943
EST:     CATGATGATGACTACAGTTGCTTGTAAAAAAGCAGGGTTGAACTTTGCAG                         GGGTTCATGATTCATATTGGACACATGCGTGTGATGTTGATGAAATGAACA
genomic: CATGATGATGACTACAGTTGCTTGTAAAAAAGCAGGGTTGAACTTTGCAGgtgcttattg ... ttaaatgcagGGGTTCATGATTCATATTGGACACATGCGTGTGATGTTGATGAAATGAACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatgttgacttttgattaggaatttaaatttgtaaatcgatgcttaaatgcagGGGTTCATGATTCATATTGGACACATGCGTGTGATGTTGATGAAATGAACAGGATACTCAGGGAAAAGTTTGTTGAACTCTATGATGCTCCAATATTGGA
           ttttgattaggaattt  TA-rich tract