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...taacggctgtttgaatttttgtaatagttgccatcagaaaaattgtagttttgatgtcttgttggtagttatatactttttgttcattatcttgtgacagTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAGAATTAAATGTTTGTTGGAAGAAGATTGGTCACTACAACATGAAGTGTA
species | Glycine max |
transcript | GLYMA08G26180.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCAACAGTTCCCTGTTGAAAGGAAGTGGGCCCTTGGGCTTCAG TCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAEST: gi|208318672|gb|GE112917.1|GE112917
genomic: GCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAGgtatgacgaa ... cttgtgacagTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAA
EST: GATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAG TCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAEST: gi|207775418|gb|GD746849.1|GD746849
genomic: GATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAGgtatgacgaa ... cttgtgacagTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAA
EST: GATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAG TCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAEST: gi|51335928|gb|CO979794.1|CO979794
genomic: GATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAGgtatgacgaa ... cttgtgacagTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAA
EST: GATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAG TCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAEST: gi|24205208|gb|BU964461.1|BU964461
genomic: GATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAGgtatgacgaa ... cttgtgacagTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAA
EST: GATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAG TCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAEST: gi|207827077|gb|GD799894.1|GD799894
genomic: GATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAGgtatgacgaa ... cttgtgacagTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAA
EST: GATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAG TCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAEST: gi|9819566|gb|BE555079.1|BE555079
genomic: GATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAGgtatgacgaa ... cttgtgacagTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAA
EST: GATCGANGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAG TCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAGAGCTTTGCGAEST: gi|23734193|gb|BU765320.1|BU765320
genomic: GATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAGgtatgacgaa ... cttgtgacagTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAA
EST: GATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAG TCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAEST: gi|14009024|gb|BG725628.1|BG725628
genomic: GATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAGgtatgacgaa ... cttgtgacagTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAA
EST: GATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAG TCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAEST: gi|193563472|gb|FK521361.1|FK521361
genomic: GATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAGgtatgacgaa ... cttgtgacagTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAA
EST: ATGGGCCCTTGGGCTTCAG TCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAEST: gi|209726301|gb|BW659614.1|BW659614
genomic: ATGGGCCCTTGGGCTTCAGgtatgacgaa ... cttgtgacagTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAA
EST: GATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAG TCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAEST: gi|193644137|gb|FK592486.1|FK592486
genomic: GATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAGgtatgacgaa ... cttgtgacagTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAA
EST: GATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAG TCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTG
genomic: GATCGAGGCAACAGTTCCCTGTTGAAAGGAAATGGGCCCTTGGGCTTCAGgtatgacgaa ... cttgtgacagTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTG
tagttttgatgtcttgttggtagttatatactttttgttcattatcttgtgacagTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAGAATTAAATGTTTGTTGGAAGAAGATTGGTCACTACAACATGAAGTGTA
ttttgat putative branch site (score: 4)
ttatctt putative PPT
ttatatactttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacggctgtttgaatttttgtaatagttgccatcagaaaaattgtagttttgatgtcttgttggtagttatatactttttgttcattatcttgtgacagTCTCGAGCCCATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCTTTGCAAGAATTAAATGTTTGTTGGAAGAAGATTGGTCACTACAACATGAAGTGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- -cggctgt
- - - - - - - - - - - - - - tgccatc
- - - - - - - - - - - - - - - - - -agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttggta