1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...acaaagaaatgttttgttagcttgttgttagtccataaagtatataatggtgaagctgataagtagatataacttgggtatgttgctctctacatttcagAAGCACGTAAACCAGAAAGTGAAGATGTTTTCATGCATGATGATGAAGAGGCTAATGTTCCTGATGAAGAAAAGATTAATGAGGTTGGTGGATGGACTGA
species | Glycine max |
transcript | GLYMA08G24660.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGTCTTCACAGAGATGGAAGAATTTGTCTGGGGTCTCCACATTGATGAAG AAGCACGTAAACCAGAAAGTGAAGATGTTTTCATGCATGATGATGAAGAGGEST: gi|192296695|gb|FG991263.1|FG991263
genomic: GGTCTTCACAGAGATGGAAGAATTTGTCTGGGGTCTCCACATTGATGAAGgtaattttta ... tacatttcagAAGCACGTAAACCAGAAAGTGAAGATGTTTTCATGCATGATGATGAAGAGG
EST: GGTCTTCACAGAGATGGAAGAATTTGTCTGGGGTCTCCACATTGATGAAG AAGCACGTAAACCAGAAAGTGAAGATGTTTTCATGCATGATGATGAAGAGGEST: gi|254321939|gb|GR837353.1|GR837353
genomic: GGTCTTCACAGAGATGGAAGAATTTGTCTGGGGTCTCCACATTGATGAAGgtaattttta ... tacatttcagAAGCACGTAAACCAGAAAGTGAAGATGTTTTCATGCATGATGATGAAGAGG
EST: GGTCTTCACAGAGATGGAAGAATTTGTCTGGGGTCTCCACATTGATGAAG AAGCACGTAAACCAGAAAGTGAAGATGTTTTCATGCATGATGATGAAGAGG
genomic: GGTCTTCACAGAGATGGAAGAATTTGTCTGGGGTCTCCACATTGATGAAGgtaattttta ... tacatttcagAAGCACGTAAACCAGAAAGTGAAGATGTTTTCATGCATGATGATGAAGAGG
aatggtgaagctgataagtagatataacttgggtatgttgctctctacatttcagAAGCACGTAAACCAGAAAGTGAAGATGTTTTCATGCATGATGATGAAGAGGCTAATGTTCCTGATGAAGAAAAGATTAATGAGGTTGGTGGATGGACTGA
atataac putative branch site (score: 3)
ttgctctct putative PPT
ataagtagatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaagaaatgttttgttagcttgttgttagtccataaagtatataatggtgaagctgataagtagatataacttgggtatgttgctctctacatttcagAAGCACGTAAACCAGAAAGTGAAGATGTTTTCATGCATGATGATGAAGAGGCTAATGTTCCTGATGAAGAAAAGATTAATGAGGTTGGTGGATGGACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- aaagaaa
- - - - -tgttttg
- - - - - - - - - -gcttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - -gaagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtatg