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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatttaatcttcttttgtgatattttaattttgcttttctatactctctggattggtcaaccattcaccgttccaattgctgtaatttttaaattgaattactttgcagTCTACCCGGTGGTTACTTTACACTGAGCAAGCACCTTCAGCATGGTTCAATTTTGCTTTGTGTGGGTTGATTGGTATTATCACTGCTTACATATTTGTCT

Basic information

species Glycine max
transcript GLYMA08G24120.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24120.2 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os02g33490.1 (Oryza sativa), 3'ss of exon 9
gtaatatttaatcttcttttgtgatattttaattttgcttttctatactctctggattggtcaaccattcaccgttccaa--ttgctgtaatttttaaattgaattactttgcagTCTACCCGGTGGTTACTTTACACTGAGCAAGCACCTTCAGCATGGTTCAATTTTGCTTTGTGTGGGTTGATTGGTATTATCACTGCTTACATATTTGTCT
             |   || ||| | | ||  | || |||||||  | |      |      ||   ||     |   ||  ||| | ||||  ||    ||  |   ||| ||||||||||||||| | || |||||||| ||||||||||| |||||| |||||||||| |||||||| ||| | || || ||||| || ||    ||||| |
----------ggttatgttggtgttgtcttgttcttccttttctgcagt-----aaacatcaaattcttttttctctgaagtttgttataataattggcctgtgtacattttcagTCTACCCGGTGGCTCCTGTACACTGAACAAGCACCTTCTGCATGGCTCAATTTTGCCTTGTGTGGCTTGGTGGGCATCATCACAGCATATGCTTTTGTTT

upper sequence: GLYMA08G24120.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv09s0054g00700.t01 (Vitis vinifera), 3'ss of exon 9
gtaatatttaatcttcttttgtgatatttta---attttgcttttctatactctctggattg-gtcaaccattcaccgttccaattgctgtaatttttaaattgaattactttgcagTCTACCCGGTGGTTACTTTACACTGAGCAAGCACCTTCAGCATGGTTCAATTTTGCTTTGTGTGGGTTGATTGGTATTATCACTGCTTACATATTTGTCT
                  |||  ||||||||   | | || || ||  || | |    |||| ||  ||   |    |||    ||| || | | ||| ||||      |||| ||||||||||| ||| |||||||||| || ||||||||||| || ||| | || ||||| || ||||| ||  |||| ||||| || |||||  | |||||||
------------ggaagcttgcaatattttacctactgtgattatcattattattattattgtgtgtactgatgcatgtttttgttggtg-actgtttgaattac----ctttacagTCTACCCGTTGGCTACTTTACACCGAACAAGCACCTTCTGCTTGGATGAACTTTGCCTTATGTGGATTAGTTGGAATTATGACAGCTTATGTTTTTGTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207697854|gb|GD680023.1|GD680023
EST:     TCTTTTACGATTGTTTTAGCTGTTCTGGCATTCGGTTTG                         TCTACCCGGTGGTTACTTTACACTGAGCAAGCACCTTCAGCATGGTTCAAT
genomic: TCTTTTACGATTGTTTTAGCTGTTCTGGCATTCGGTTTGgtaatattta ... tactttgcagTCTACCCGGTGGTTACTTTACACTGAGCAAGCACCTTCAGCATGGTTCAAT
EST: gi|193600080|gb|FK549789.1|FK549789
EST:     AGAAAGGATATTCTTTTACGATTGTTTTAGCTGTTCTGGCATTCGGTTTG                         TCTACCCGGTGGTTACTTTACACTGAGCAAGCACCTTCAGCATGGTTCAAT
genomic: AGAAAGGATATTCTTTTACGATTGTTTTAGCTGTTCTGGCATTCGGTTTGgtaatattta ... tactttgcagTCTACCCGGTGGTTACTTTACACTGAGCAAGCACCTTCAGCATGGTTCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtcaaccattcaccgttccaattgctgtaatttttaaattgaattactttgcagTCTACCCGGTGGTTACTTTACACTGAGCAAGCACCTTCAGCATGGTTCAATTTTGCTTTGTGTGGGTTGATTGGTATTATCACTGCTTACATATTTGTCT
                                            ttacttt  CT-rich tract
                    aattgctgtaattttt  TA-rich tract