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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattaatttgaattgttgcatcaacacacacacacacacacacacacacacacacacatatatatatatatatatatatatatatatatatatatatatatttgttttgtatttaactcaaaattgaccatgtttatactattgttagCCATGGAGTGTGCCAGAAGTGCTACGCCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCA

Basic information

species Glycine max
transcript GLYMA08G21610.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21610.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 3'ss of exon 8
----gtacattaatttgaattgttgcatcaacacacacacacacacacacacacacacacac-acatatatatatatatatatata-tatatatatatat-atatatatatttgttttgtatttaactcaaaattgaccatgtttatactat-tgttagCCATGGAGTGTGCCAGAAGTGCTACGCCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCA
    | |   | ||    ||| ||   |        |       | ||||| |     ||   | || | ||  |    || | |  | ||  |   ||| | | || |   | |     | |  |     | || | |||||| ||   || |  ||||||||||||||||| |||||| | || || ||||| |||||||||||||| || ||||| || ||||| ||||| 
gtaagaaacctcatccttatttttatgtagttttttattagttgatacacaaatgttaaccttatatgtttagttcatcatgtttcctgtacttgattatgaaacatttgactatcaaaaactggatgatgactttatcatgttcatttcatctcctagCCATGGAGTGTGCCTGAAGTGTTGCGTCCTCTGTATGAATCATCAACAGTGCTTGCTCAAAAAACAACAATGGCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193704835|gb|FK645697.1|FK645697
EST:     GTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAG                         CCATGGAGTGTGCCAGAAGTGCTACGCCCACTGTACGAATCATCAACAGTA
genomic: GTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAGgtacattaat ... ctattgttagCCATGGAGTGTGCCAGAAGTGCTACGCCCACTGTACGAATCATCAACAGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatatttgttttgtatttaactcaaaattgaccatgtttatactattgttagCCATGGAGTGTGCCAGAAGTGCTACGCCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCA
                            aattgac  putative branch site (score: 3)
     tatttgttttgtattt  TA-rich tract