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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgtttctttttataagactcgatctataatatcatgttatgatgagatgtatttatgataattaagtgagcctttttcctgcctattccaatttttagGTTCTTCAAGCAATTGTTGTTGGTGTTTCTGATCCAACAAATGGCAGCTGGGATGTTTAGGGTCATTTCTGGAGTGTGCAGGACAATGATTATAGCTAAC

Basic information

species Glycine max
transcript GLYMA08G21540.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21540.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv09s0002g03640.t01 (Vitis vinifera), 3'ss of exon 8
-----------------------------------------------------------------------------------------tttgtttctttt-tataagactcgatctataatatcatgttatga------tgagatgtatttatgataattaagtgagccttttt--cctgcctattccaatttt-tagGTTCTTCAAGCAATTGTTGTTGGTGTTTCTGATCCAACAAATGGCAGCTGGGATGTTTAGGGTCATTTCTGGAGTGTGCAGGACAATGATTATAGCTAAC
                                                                                         |   | ||||   || || | |   |  ||  | ||||      |        | | || |  || | |    || | |   |||   | |   | | ||||||||  |||||||||||| || |  || ||||||||||||||||||||||||| |||||| | |||||| ||||| ||||||| |||||||| ||||| || || |||
gtaacctcagttgaatcagaactaattcattacttttcacagcctttgtagttgatgtaggatggataagtcttggcccttggtcacgatgcatgtcttgggtacaaaatttccttcattttctcatcaaccaaacaacccaaaaagtttaaatcaaatcctagcgtgtgatttgaacttatgtgtaccaattttgcagGTTCTTCAAGGAACTACTGGTGGTGTTTCTGATCCAACAAATGGCTGCTGGGCTTTTTAGGCTCATTGCTGGAGTCTGCAGGACTATGATCATTGCCAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagatgtatttatgataattaagtgagcctttttcctgcctattccaatttttagGTTCTTCAAGCAATTGTTGTTGGTGTTTCTGATCCAACAAATGGCAGCTGGGATGTTTAGGGTCATTTCTGGAGTGTGCAGGACAATGATTATAGCTAAC
                           cctttttcctgcctat  CT-rich tract
      tatttatgataattaa  TA-rich tract