1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...aaaagagacaatccacacttttgaagtttattaaaatgctcattgatgcccatgaaattgtatcctgtttaatgtagtcattttgataacaacttgttagGATTCATTGTCAAGAGAGTAATGAAGAAAGCTCAGAAACAGAGTCTGTTTATTCACTTAAATGCCACATATCACAGGAGGTGAACCATTTGCACGAAGGG
species | Glycine max |
transcript | GLYMA08G20900.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAAAATCCCGATGCTGTGAAGGCACTCTTTGGCATAGAACTTATTAGCAC GATTCATTGTCAAGAGAGTAATGAAGAAAGCTCAGAAACAGAGTCTGTTTAEST: gi|17022113|gb|BM093147.1|BM093147
genomic: GAAAATCCCGATGCTGTGAAGGCACTCTTTGGCATAGAACTTATTAGCAGgtacagtcta ... aacttgttagGATTCATTGTCAAGAGAGTAATGAAGAAAGCTCAGAAACAGAGTCTGTTTA
EST: GTGAAGGCACTCTTTGGCATAGAACTTATTAGCAG GATTCATTGTCAAGAGAGTAATGAAGAAAGCTCAGAAACAGAGTCTGTTTAEST: gi|209716351|gb|BW650750.1|BW650750
genomic: GTGAAGGCACTCTTTGGCATAGAACTTATTAGCAGgtacagtcta ... aacttgttagGATTCATTGTCAAGAGAGTAATGAAGAAAGCTCAGAAACAGAGTCTGTTTA
EST: GAAAATCCCGATGCTGTGAAGGCACTCTTTGGCATAGAACTTATTAGCAG GATTCATTGTCAAGAGAGTAATGAAGAAAGCTCAGAAACAGAGTCTGTTTA
genomic: GAAAATCCCGATGCTGTGAAGGCACTCTTTGGCATAGAACTTATTAGCAGgtacagtcta ... aacttgttagGATTCATTGTCAAGAGAGTAATGAAGAAAGCTCAGAAACAGAGTCTGTTTA
atgcccatgaaattgtatcctgtttaatgtagtcattttgataacaacttgttagGATTCATTGTCAAGAGAGTAATGAAGAAAGCTCAGAAACAGAGTCTGTTTATTCACTTAAATGCCACATATCACAGGAGGTGAACCATTTGCACGAAGGG
tgataac putative branch site (score: 2)
attttgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaagagacaatccacacttttgaagtttattaaaatgctcattgatgcccatgaaattgtatcctgtttaatgtagtcattttgataacaacttgttagGATTCATTGTCAAGAGAGTAATGAAGAAAGCTCAGAAACAGAGTCTGTTTATTCACTTAAATGCCACATATCACAGGAGGTGAACCATTTGCACGAAGGG
aaaagaga
- - - - - - ccacact
- - - - - - - - - - - - - - - - - aatgctc
- - - - - - - - - - - - - - - - - - - - - - gatgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgtag