1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aagttacagcatgctgcaattatacttactagtttgctaagtttgttgcacacttttggtttctaaatttgtcctttattcttgtataacaatcaattagGTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGGCAGTTCTCGTCCATGGAGCTGATGGGACGGTGCAGACACACCAACTTGATTGACGGAGGAAAC
species | Glycine max |
transcript | GLYMA08G20670.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAG GTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGGEST: gi|58020488|gb|CX707230.1|CX707230
genomic: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAGgtcagttaac ... aatcaattagGTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGG
EST: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAG GTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGGCAGTTCTCGTCCATEST: gi|208151711|gb|GD945554.1|GD945554
genomic: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAGgtcagttaac ... aatcaattagGTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGGCAGTTCTCGTCCAT
EST: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAG GTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGGCAGTTCTCGTCCATEST: gi|58020876|gb|CX707618.1|CX707618
genomic: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAGgtcagttaac ... aatcaattagGTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGGCAGTTCTCGTCCAT
EST: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAG GTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGGCAGTTCTCGTCCATEST: gi|209700617|gb|BW670335.1|BW670335
genomic: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAGgtcagttaac ... aatcaattagGTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGGCAGTTCTCGTCCAT
EST: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAG GTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGGCAGTTCTCGTCCATEST: gi|214005174|gb|DB985728.1|DB985728
genomic: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAGgtcagttaac ... aatcaattagGTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGGCAGTTCTCGTCCAT
EST: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAG GTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGGCAGTTCTCGTCCATEST: gi|7589443|gb|AW705217.1|AW705217
genomic: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAGgtcagttaac ... aatcaattagGTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGGCAGTTCTCGTCCAT
EST: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAA GTCCCCGAGGTTTCCAAGACCGCGGGAGGAGTTATGGCAGEST: gi|58020680|gb|CX707422.1|CX707422
genomic: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAGgtcagttaac ... aatcaattagGTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGGCAG
EST: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAG GTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGGCAGTTCTCGTCCATEST: gi|120495402|gb|EH223569.1|EH223569
genomic: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAGgtcagttaac ... aatcaattagGTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGGCAGTTCTCGTCCAT
EST: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAG GTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGGCAGTTCTCGTCCATEST: gi|15000832|gb|BI321646.1|BI321646
genomic: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAGgtcagttaac ... aatcaattagGTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGGCAGTTCTCGTCCAT
EST: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAG GTCCCCGAGGTTTCCAAGACCGCGGG
genomic: GAGTCCTGAATTAGCAGCAATGGGGCGTGGTGCACCACCTCCACCTTCAGgtcagttaac ... aatcaattagGTCCCCGAGGTTTCCAAGACCGCGGG
ttgcacacttttggtttctaaatttgtcctttattcttgtataacaatcaattagGTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGGCAGTTCTCGTCCATGGAGCTGATGGGACGGTGCAGACACACCAACTTGATTGACGGAGGAAAC
tttattcttgtataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagttacagcatgctgcaattatacttactagtttgctaagtttgttgcacacttttggtttctaaatttgtcctttattcttgtataacaatcaattagGTCCCCGAGGTTTCCAAGACCGCGGGAGGGGTTATGGCAGTTCTCGTCCATGGAGCTGATGGGACGGTGCAGACACACCAACTTGATTGACGGAGGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - gcatgct
- - - - - - - - - - - - - - - - - tgctaag
- - - - - - - - - - - - - - - - - - - - - - - tgcacac