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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttaatagttcaaaattttaaatacagataaatgctctttccgtggaatttcgactttatacaaaaactgtttttatgtatattgattgtgttgttgtagAACGTCAAGAATCCCAACCGCCACTTGGCTGGCCAGAACGGAAGCGTATTGCATTGGGATCTGCAAGGGGGCTTGCTTATTTGCATGATCATTGTGACCC

Basic information

species Glycine max
transcript GLYMA08G19270.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193630208|gb|FK581765.1|FK581765
EST:     GCTTGTGTATCCTTACATGGCTAACGGAAGTGTAGCATCATGTTTACGAG                         AACGTCAAGAATCCCAACCGCCACTTGGCTGGCCAGAACGGAAGCGTATTG
genomic: GCTTGTGTATCCTTACATGGCTAACGGAAGTGTAGCATCATGTTTACGAGgtatccctat ... gttgttgtagAACGTCAAGAATCCCAACCGCCACTTGGCTGGCCAGAACGGAAGCGTATTG
EST: gi|193526747|gb|FK487115.1|FK487115
EST:     GCTTGTGTATCCTTACATGGCTAACGGAAGTGTAGCATCATGTTTACGAG                         AACGTCAAGAATCCCAACCGCCACTTGGCTGGCCAGAACGGAAGCGTATTG
genomic: GCTTGTGTATCCTTACATGGCTAACGGAAGTGTAGCATCATGTTTACGAGgtatccctat ... gttgttgtagAACGTCAAGAATCCCAACCGCCACTTGGCTGGCCAGAACGGAAGCGTATTG
EST: gi|308099042|gb|HO760883.1|HO760883
EST:     GCTTGTGTATCCTTACGTGGCTAACGGAAGTGCAGCATCATGTTTACGAG                         AACGTCAAGAATCCCAACCGCCACTTGGCTGGCCAGAACGGAAGCGTATTG
genomic: GCTTGTGTATCCTTACATGGCTAACGGAAGTGTAGCATCATGTTTACGAGgtatccctat ... gttgttgtagAACGTCAAGAATCCCAACCGCCACTTGGCTGGCCAGAACGGAAGCGTATTG
EST: gi|193347629|gb|FK310589.1|FK310589
EST:     GCTTGTGTATCCTTACATGGCTAACGGAAGTGTAGCATCATGTTTACGAG                         AACGTCAAGAATCCCAACCGCCACTTGGCTGGCCAGAACGGAAGCGTATTG
genomic: GCTTGTGTATCCTTACATGGCTAACGGAAGTGTAGCATCATGTTTACGAGgtatccctat ... gttgttgtagAACGTCAAGAATCCCAACCGCCACTTGGCTGGCCAGAACGGAAGCGTATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaatttcgactttatacaaaaactgtttttatgtatattgattgtgttgttgtagAACGTCAAGAATCCCAACCGCCACTTGGCTGGCCAGAACGGAAGCGTATTGCATTGGGATCTGCAAGGGGGCTTGCTTATTTGCATGATCATTGTGACCC
                                   tattgat  putative branch site (score: 3)
          tttatacaaaaactgt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttaatagttcaaaattttaaatacagataaatgctctttccgtggaatttcgactttatacaaaaactgtttttatgtatattgattgtgttgttgtagAACGTCAAGAATCCCAACCGCCACTTGGCTGGCCAGAACGGAAGCGTATTGCATTGGGATCTGCAAGGGGGCTTGCTTATTTGCATGATCATTGTGACCC

- - - - - - - - - - - - - - - aatgctc
- - - - - - - - - - - - - - - - - - - ttccgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaaaa