1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttggtgcctttactgaagcatagtttttgttatgcaagtttcaactaaagttagttgattcatatttgattttcattctcattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATCTCATTAACCGATCAACATCATCCAACAAGACTTGAGAGAGAGGATATTT
species | Glycine max |
transcript | GLYMA08G18810.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAG GGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATCEST: gi|207760220|gb|GD731905.1|GD731905
genomic: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATC
EST: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAG GGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATCEST: gi|9204058|gb|BE330282.1|BE330282
genomic: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATC
EST: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAG GGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATCEST: gi|193481178|gb|FK447305.1|FK447305
genomic: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATC
EST: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAG GGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATC
genomic: ATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGGACCCAGCCTATAAGgtttggtgcc ... cattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATC
caagtttcaactaaagttagttgattcatatttgattttcattctcattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATCTCATTAACCGATCAACATCATCCAACAAGACTTGAGAGAGAGGATATTT
ttttcattctcattct CT-rich tract
attcatatttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggtgcctttactgaagcatagtttttgttatgcaagtttcaactaaagttagttgattcatatttgattttcattctcattctgtagGGTGAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTCCCTCGTCCGGCATCTCATTAACCGATCAACATCATCCAACAAGACTTGAGAGAGAGGATATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT