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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagattgctcatggcaaataattttcctgacttcatcctattttgtttgcatttagtttctgaattctgatcatgtcttcatagGTGGAGATTCCACGCGCTTTTGTTTGTGCTGAGAGCAAAATTTTTGATGTGTCAGAATGGGCGATATGTCAGGTTAGTGTACTCCAGTTAGCATTACATG

Basic information

species Glycine max
transcript GLYMA08G18540.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15284916|gb|BI468807.1|BI468807
EST:     ATGGATGGGTTGTTTATAAAGGGTCTTTGGTTTTTGACAGGCCTCAGAAG                         GTGGAGATTCCACGCGCTTTTGTTTGTGCTGAGAGCAAAATTTTTGATGTG
genomic: ATGGATGGGTTGAATATAAAGGGTCTTTGGTTTTTGACAGGCCTCAGAAGgtagattgct ... gtcttcatagGTGGAGATTCCACGCGCTTTTGTTTGTGCTGAGAGCAAAATTTTTGATGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttcatcctattttgtttgcatttagtttctgaattctgatcatgtcttcatagGTGGAGATTCCACGCGCTTTTGTTTGTGCTGAGAGCAAAATTTTTGATGTGTCAGAATGGGCGATATGTCAGGTTAGTGTACTCCAGTTAGCATTACATG
                                            tgtcttc  CT-rich tract
         tattttgttt  TA-rich tract