Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaaacttatagtaaactgatttgattgcctaacatttatattgttaatgtttttgtaaatagaaacaaatgattcacaatcaattcattacattttcagGTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAACTAAGGCAAG

Basic information

species Glycine max
transcript GLYMA08G16770.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16770.1 (Glycine max), 3'ss of exon 9
lower sequence: AT2G44350.2 (Arabidopsis thaliana), 3'ss of exon 9
----------tgaaacttatagtaaa----ctgatttgattgcc-taacatttatattgttaatgtttttgtaaa-tagaaacaaatgattcacaatcaa---------ttcattac---attttcagGTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAACTAAGGCAAG
            |||||  || |       ||| | |  |||   |||   ||  |   ||| ||||||| |    || ||  |||  |||  ||    |         ||| ||||   || | |||||||| ||||||||||| ||||||||||||  ||| ||   |||| ||| 
gtgtggttctctaaactcgtattgttgtttctgttcttcttgtgataagcgttggaaacttattgttttttttggctataagtaaacaattttcagcagaatgataattttctttacctaatatccagGTGCAAAGTGAGTTTCAAAAGGCATATGAGAATGGAATTCATAAGTCAAA

upper sequence: GLYMA08G16770.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv13s0156g00180.t01 (Vitis vinifera), 3'ss of exon 9
tgaaacttatagtaaactgatttgattgcctaacattta--tattgttaatgtttttgtaaatagaaacaaatgattcacaatcaattcattacat-tttcagGTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAACTAAGGCAAG
  ||| | |  | | ||  ||     |       ||  |  | ||| | |    |||  |  | ||    ||  ||   |||||| ||  |    | |||||||| |||||||| ||||||||||||||||||   |||||  | ||  ||| 
-caaagtgaagggacac--atcaagctattgggtatgcaggttttgatgagcagtttagatgttgattttaacaatattcaatcactttttattgtatttcagGTTCAGAGTGAATTTCAGAAGGCATATGAGAAGGGGATTCCAAAATCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213593279|gb|DB966104.1|DB966104
EST:     TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAG                         GTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAACTAAGGCAAGG
genomic: TTTCTGCTCATCCAATGACTCAATTCACAACTGGTGTCATGGCCCTTCAGgttgaataac ... acattttcagGTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAACTAAGGCAAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgtttttgtaaatagaaacaaatgattcacaatcaattcattacattttcagGTGCAGAGTGAGTTTCAGAAGGCATATGAGGGTGGGATAACTAAGGCAAG
 tgttaat  putative branch site (score: 3)
                                              cattttc  putative PPT
     tttttgtaaatagaaa  TA-rich tract