1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaaatatctacatgttgtcagtctcatgaacgaattgcatctatgctattactattttggactcacattcttctgtaattcccttgttcagAGATAACACAAGAATCATCACATCTTTACCAGTATCTCCCTCTTCAAGTCCATTGCGAAGGTATGAGCCAATGCATCAGAGCTGTTTTTTTTCTCCTCCT
species | Glycine max |
transcript | GLYMA08G16670.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TATGCATCAAAGCCAGCTCTTGCAGCACCACGTGCATTAAGGAGTTCAAG AGATAACACAAGAATCATCACATCTTTACCAGTATCTCCCTCTTCAAGTCCEST: gi|19348314|gb|BM892846.1|BM892846
genomic: TATGCATCAAAGCCAGCTCTTGCAGCACCACGTGCATTAAGGAGTTCAAGgtaaaatatc ... ccttgttcagAGATAACACAAGAATCATCACATCTTTACCAGTATCTCCCTCTTCAAGTCC
EST: TATGCATCAAAGCCAGCTCTTGCAGCACCACGTGCATTAAGGAGTTCAAG AGATAACACAAGAATCATCACATCTTTACCAGTATCTCCCTCTTCAAGTCCEST: gi|17401098|gb|BM177880.1|BM177880
genomic: TATGCATCAAAGCCAGCTCTTGCAGCACCACGTGCATTAAGGAGTTCAAGgtaaaatatc ... ccttgttcagAGATAACACAAGAATCATCACATCTTTACCAGTATCTCCCTCTTCAAGTCC
EST: TATGCATCAAAGCCAGCTCTTGCAGCACCACGTGCATTAAGGAGTTCAAG AGATAACACAAGAATCATCACATCTTTACCAGTATCTCCCTCTTCAAGTCC
genomic: TATGCATCAAAGCCAGCTCTTGCAGCACCACGTGCATTAAGGAGTTCAAGgtaaaatatc ... ccttgttcagAGATAACACAAGAATCATCACATCTTTACCAGTATCTCCCTCTTCAAGTCC
gcatctatgctattactattttggactcacattcttctgtaattcccttgttcagAGATAACACAAGAATCATCACATCTTTACCAGTATCTCCCTCTTCAAGTCCATTGCGAAGGTATGAGCCAATGCATCAGAGCTGTTTTTTTTCTCCTCCT
gactcac putative branch site (score: 2)
ttcccttgttc putative PPT
tattactatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaatatctacatgttgtcagtctcatgaacgaattgcatctatgctattactattttggactcacattcttctgtaattcccttgttcagAGATAACACAAGAATCATCACATCTTTACCAGTATCTCCCTCTTCAAGTCCATTGCGAAGGTATGAGCCAATGCATCAGAGCTGTTTTTTTTCTCCTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC