1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaataactgatgacattatatttcttctcaccccatcaattttgttggttgatattgtatgatatgctttatgctttatgttttatacttctttttgtgaacattaatatcgagcattttttcctacctttttcagAATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTTGCAGAGCTTTTGTGCCTCAGTGTACAG
species | Glycine max |
transcript | GLYMA08G15340.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTTGGGAGAAAAAGCAGCAGAAGATCTAAGGCAAAGAATAATTGAACAT AATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTTEST: gi|209699016|gb|BW656131.1|BW656131
genomic: CTTTGGGAGAAAAAGCAGCAGAAGATCTAAGGCAAAGAATAATTGAACATgtaaataact ... cctttttcagAATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTT
EST: AAGGCAAAGAATAATTGAACAT AATATTC-TGTTNGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTEST: gi|6724429|gb|AW308828.1|AW308828
genomic: AAGGCAAAGAATAATTGAACATgtaaataact ... cctttttcagAATATTCTTGTT-GTATCAAAATACTATGCAAGAATTACATTGAAGAGACT
EST: AGAAAAAGCAGCAGAAGATCTAAGGCAAAGAATAATTGAACAT AATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTTEST: gi|9903102|gb|BE612070.1|BE612070
genomic: AGAAAAAGCAGCAGAAGATCTAAGGCAAAGAATAATTGAACATgtaaataact ... cctttttcagAATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTT
EST: CTTTGGGAGAAAAAGCAGCAGAAGATCTAAGGCAAAGAATAATTGAACAT AATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTTEST: gi|23064146|gb|BU578919.1|BU578919
genomic: CTTTGGGAGAAAAAGCAGCAGAAGATCTAAGGCAAAGAATAATTGAACATgtaaataact ... cctttttcagAATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTT
EST: CAAAGAATAATTGAACAT AATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTTEST: gi|7640049|gb|AW734358.1|AW734358
genomic: CAAAGAATAATTGAACATgtaaataact ... cctttttcagAATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTT
EST: CTTTGGGAGAAAAAGCAGCAGAAGATCTAAGGCAAAGAATAATTGAACAT AATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTTEST: gi|16347022|gb|BI972617.1|BI972617
genomic: CTTTGGGAGAAAAAGCAGCAGAAGATCTAAGGCAAAGAATAATTGAACATgtaaataact ... cctttttcagAATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTT
EST: AGCAGAAGATCTAAGGCAAAGAATAATTGAACAT AATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTTEST: gi|151409280|gb|EV279088.1|EV279088
genomic: AGCAGAAGATCTAAGGCAAAGAATAATTGAACATgtaaataact ... cctttttcagAATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTT
EST: CTTTGGGAGAAAAAGCAGCAGAAGATCTAAGGCAAAGAATAATTGAACAT AATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTTEST: gi|15204177|gb|BI426945.1|BI426945
genomic: CTTTGGGAGAAAAAGCAGCAGAAGATCTAAGGCAAAGAATAATTGAACATgtaaataact ... cctttttcagAATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTT
EST: CTTTGGGAGAAAAAGCAGCAGAAGATCTAAGGCAAAGAATAATTGAACAT AATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTTEST: gi|21638863|gb|BM139909.1|BM139909
genomic: CTTTGGGAGAAAAAGCAGCAGAAGATCTAAGGCAAAGAATAATTGAACATgtaaataact ... cctttttcagAATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTT
EST: CTTTGGGAGAAAAAGCAGCAGAAGATCTAAGGCAAAGAATAATTGAACAT AATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTTEST: gi|209725253|gb|BW672728.1|BW672728
genomic: CTTTGGGAGAAAAAGCAGCAGAAGATCTAAGGCAAAGAATAATTGAACATgtaaataact ... cctttttcagAATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTT
EST: CTTTGGGAGAAAAAGCAGCAGAAGATCTAAGGCAAAGAATAATTGAACAT AATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTTEST: gi|17022111|gb|BM093145.1|BM093145
genomic: CTTTGGGAGAAAAAGCAGCAGAAGATCTAAGGCAAAGAATAATTGAACATgtaaataact ... cctttttcagAATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTT
EST: CTTTGGGAGAAAAAGCAGCAGAAGATCTAAGGCAAAGAATAATTGAACAT AATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTT
genomic: CTTTGGGAGAAAAAGCAGCAGAAGATCTAAGGCAAAGAATAATTGAACATgtaaataact ... cctttttcagAATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTT
tttatacttctttttgtgaacattaatatcgagcattttttcctacctttttcagAATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTTGCAGAGCTTTTGTGCCTCAGTGTACAG
cattaat putative branch site (score: 3)
cattttttcctacctt putative PPT
aacattaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaataactgatgacattatatttcttctcaccccatcaattttgttggttgatattgtatgatatgctttatgctttatgttttatacttctttttgtgaacattaatatcgagcattttttcctacctttttcagAATATTCTTGTTGTATCAAAATACTATGCAAGAATTACATTGAAGAGACTTGCAGAGCTTTTGTGCCTCAGTGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT