1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atactctagctgctgatttttttttattgtatcacatagaaaatattatctgggaattctatcctaatttgttttgtattttgtgctgttgcatggacagTTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAGATGGGCTTCCACCTCTTGAAAAGAACATGAATCATTTGAGCATAGTCAA
species | Glycine max |
transcript | GLYMA08G14780.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAG TTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAGEST: gi|192331294|gb|FK021005.1|FK021005
genomic: TTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAGgtatgcattg ... gcatggacagTTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAG
EST: TCGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAG TTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAGEST: gi|57574219|gb|CX547194.1|CX547194
genomic: TTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAGgtatgcattg ... gcatggacagTTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAG
EST: TTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAG TTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAGEST: gi|192320790|gb|FK013880.1|FK013880
genomic: TTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAGgtatgcattg ... gcatggacagTTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAG
EST: TTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAG TTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAGEST: gi|58022603|gb|CX709344.1|CX709344
genomic: TTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAGgtatgcattg ... gcatggacagTTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAG
EST: TTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAG TTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAGEST: gi|192327944|gb|FK022475.1|FK022475
genomic: TTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAGgtatgcattg ... gcatggacagTTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAG
EST: TTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAG TTACGACCCCTGAAAGTGAGGATAAAATCCAGAATTCTTCCGATTCTGAAGEST: gi|58018279|gb|CX705021.1|CX705021
genomic: TTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAGgtatgcattg ... gcatggacagTTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAG
EST: TTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAG TTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAGEST: gi|192331185|gb|FK020952.1|FK020952
genomic: TTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAGgtatgcattg ... gcatggacagTTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAG
EST: TTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAG TTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAG
genomic: TTGGCTGTCACAAGAGAGTCAGATTCCAAGGGCTCCTACTGACAGTGAAGgtatgcattg ... gcatggacagTTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAG
ttatctgggaattctatcctaatttgttttgtattttgtgctgttgcatggacagTTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAGATGGGCTTCCACCTCTTGAAAAGAACATGAATCATTTGAGCATAGTCAA
tcctaat putative branch site (score: 2)
taatttgttttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atactctagctgctgatttttttttattgtatcacatagaaaatattatctgggaattctatcctaatttgttttgtattttgtgctgttgcatggacagTTACGACACCTGAAAGTGAGGATAAAATCCAGAACTCTTCCGATTCTGAAGATGGGCTTCCACCTCTTGAAAAGAACATGAATCATTTGAGCATAGTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - -ctgctga
- - - - - - - - - - - - - - - - - - -agaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtt