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...gattgatacagagtgcataaatattttaccattttaaatgtttaaaaaatctggccattgcattcttctgtatttaaactgattactgatatttgttcagGTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATAAAGATTGCTGTAAATGCTGCTGCACGGCGTGATGTCCTTGATATTGCTA
species | Glycine max |
transcript | GLYMA08G13290.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AATTAGCAAGCTGGTGCAGCCACTCTATAAGCTAGTAGAGCTACATGAAG GT-CGTGATATCACCCAACTTGCC-TTTGCTGAGCGAGAATTGEST: gi|22930089|gb|BU547228.1|BU547228
genomic: AATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGA-Ggttcaaaatc ... atttgttcagGTTCGTGATATCACCCA-CTTGCCATTTGCTGAGCGAGAATTG
EST: CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAG GTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATAEST: gi|17023140|gb|BM094174.1|BM094174
genomic: CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAGgttcaaaatc ... atttgttcagGTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATA
EST: CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAG GTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAEST: gi|21676800|gb|BQ629151.1|BQ629151
genomic: CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAGgttcaaaatc ... atttgttcagGTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGA
EST: CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAG GTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATA
genomic: CAATTAGCAAGTTGGTGCAGCAACTCTATAAGCTAGTAGAGCTACATGAGgttcaaaatc ... atttgttcagGTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATA
aaaatctggccattgcattcttctgtatttaaactgattactgatatttgttcagGTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATAAAGATTGCTGTAAATGCTGCTGCACGGCGTGATGTCCTTGATATTGCTA
tactgat putative branch site (score: 2)
tttgttc CT-rich tract
tatttaaactgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattgatacagagtgcataaatattttaccattttaaatgtttaaaaaatctggccattgcattcttctgtatttaaactgattactgatatttgttcagGTTCGTGATATCACCCACTTGCCATTTGCTGAGCGAGAATTGATGCTAATAAAGATTGCTGTAAATGCTGCTGCACGGCGTGATGTCCTTGATATTGCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - -tgcataa
- - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - ctggcca