Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaatacattaattctatggtgttccatcaattgctattctagatctcttcatcactttgttctatattatgctgagcagGTTGGCTAGTTGTATGTTGGCCTCGGGGAGTGATGATGGGACTATTTCTATTCGTGATCTCAGACTGCTCAAG

Basic information

species Glycine max
transcript GLYMA08G11020.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G11020.1 (Glycine max), 3'ss of exon 9
lower sequence: AT2G19540.1 (Arabidopsis thaliana), 3'ss of exon 8
------gtattaatacatt----aattctatggtgttccatcaattgctattctagatctcttcatcactttgttctatattatgctgagcagGTTGGCTAGTTGTATGTTGGCCTCGGGGAGTGATGATGGGACTATTTCTATTCGTGATCTCAGACTGCTCAAG
      ||   | ||   |    || |  ||  ||||   |    ||||   |  ||     |  |    ||  | | | || |     | ||| |||||||||| ||||||||||| || |||||||| |||||  | || || |||||||| |||||| |||| 
gttcttgtcccactatgctgtataacttaattctgtttggttttgtgcttcccacgaatg--ttgtagtcttaatttttcttctttcatgaagGCTGGCTAGTTGCATGTTGGCCTCAGGAAGTGATGACGGGACATTCTCCATCCGTGATCTTAGACTGATCAAA

upper sequence: GLYMA08G11020.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv11s0016g02270.t01 (Vitis vinifera), 3'ss of exon 8
--------------gtattaatacattaattctatggtgttccatcaattgctattctagatctcttcatcactttgttctatattatgctgagcagGTTGGCTAGTTGTATGTTGGCCTCGGGGAGTGATGATGGGACTATTTCTATTCGTGATCTCAGACTGCTCAAG
               ||||  | | || |||  |     || |      |  |  | ||        | | |||| ||  |   | || |  |  ||| ||||||| |||||| ||||||| || ||||||||||||||  |||||||||||||||| ||  ||||||||
gtgcttaaaccttaatattgct-ccttgattgcagtacttttctgtgcctcatgctatatgcagtgaccttacttggtcattcctgattcctattagGCTGGCTAGCTGTATGCTGGCCTCTGGAAGTGATGATGGGACATTTTCTATTCGTGATCTTAGGTTGCTCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11273936|gb|BF324324.1|BF324324
EST:     GCATCTTTTAAGGCACATAATGCTGATGTGAATGTAATGTCATGGAACAG                         GTTGGCTAGTTGTATGTTGGCCTCGGGGAGTGATGATGGGACTATATCTAT
genomic: GCATCTTTTAAGGCACATAATGCTGATGTGAATGTAATGTCATGGAACAGgtattaatac ... tgctgagcagGTTGGCTAGTTGTATGTTGGCCTCGGGGAGTGATGATGGGACTATTTCTAT
EST: gi|23729869|gb|BU763041.1|BU763041
EST:     GCATCTTTTAAGGCACATAATGCTGATGTGAATGTAATGTCATGGAACAG                         GTTGGCTAGTTGTATGTTGGCCTCGGGGAGTGATGATGGGACTATTTCTAT
genomic: GCATCTTTTAAGGCACATAATGCTGATGTGAATGTAATGTCATGGAACAGgtattaatac ... tgctgagcagGTTGGCTAGTTGTATGTTGGCCTCGGGGAGTGATGATGGGACTATTTCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcaattgctattctagatctcttcatcactttgttctatattatgctgagcagGTTGGCTAGTTGTATGTTGGCCTCGGGGAGTGATGATGGGACTATTTCTATTCGTGATCTCAGACTGCTCAAG
                               tttgttctatattat  TA-rich tract