1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atgcatccaatgttgtttttaggctttcctactgtttgaatattgtgcatgcaattatgcaccaggttgacacttgtttgggcttgtgtacacattgcagGTGGTCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAG
species | Glycine max |
transcript | GLYMA08G07840.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TAAGGTGGGTGCAAGGACCTACTCATGGCATGTACCAGTATTTCATAAAG GTGGTCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATEST: gi|209704675|gb|BW675883.1|BW675883
genomic: TAAGGTGGGTGCAAGGACCTACTCATGGCATGTACCAGTATTTCATAAAGgttggtagtt ... cacattgcagGTGGTCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAAT
EST: TGCAAGGACCTACTCATGGCATGTACCAGTATTTCATAAAG GTGGTCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATEST: gi|58019656|gb|CX706398.1|CX706398
genomic: TGCAAGGACCTACTCATGGCATGTACCAGTATTTCATAAAGgttggtagtt ... cacattgcagGTGGTCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAAT
EST: GCAAGGACCTACTCATGGCATGTACCAGTATTTCATAAAG GTGGTCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATEST: gi|58019280|gb|CX706022.1|CX706022
genomic: GCAAGGACCTACTCATGGCATGTACCAGTATTTCATAAAGgttggtagtt ... cacattgcagGTGGTCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAAT
EST: CTCATGGCATGTACCAGTATTTCATAAAG GTGGTCCTTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAAT
genomic: CTCATGGCATGTACCAGTATTTCATAAAGgttggtagtt ... cacattgcagGTGGTCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAAT
tgcatgcaattatgcaccaggttgacacttgtttgggcttgtgtacacattgcagGTGGTCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAG
ggttgac putative branch site (score: 4)
aattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcatccaatgttgtttttaggctttcctactgtttgaatattgtgcatgcaattatgcaccaggttgacacttgtttgggcttgtgtacacattgcagGTGGTCCCTACAATATACACAGACATTAGAGGTCGTGTTATCCATTCAAATCAG
- gcatcca
- - - - - tgttgtt
- - - - - - - - - - - gctttcc
- - - - - - - - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgtg