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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttccttcacatttaaaactattccatgtatttgaatatttttgttttctgaaaagattttgttttcacctttaacgtagCTTGCACTTTCTGCATTTGATGAGAATTCAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAATGTACTATTTG

Basic information

species Glycine max
transcript GLYMA08G07670.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8403559|gb|BE059193.1|BE059193
EST:     GATCTGTTACAAGTATTTGTTGCACTTGTTTCCTGATAAGATGTGCTTTG                         CTTGCACTTTCTGCATTTGATGAGAATTCAGATCTTGATGTCTTGGACCAT
genomic: GATCTGTTACAAGTATTTGTTGCACTTGTTTCCTGATAAGATGTGCTTTGgtgagttcct ... tttaacgtagCTTGCACTTTCTGCATTTGATGAGAATTCAGATCTTGATGTCTTGGACCAT
EST: gi|31470792|gb|CD412820.1|CD412820
EST:     GATCTGTTACAAGTATTTGTTGCACTTGTTTCCTGATAAGATGTGCTTTG                         CTTGCACCTTCTGCATTTGATGAGAATTCAGATCTTGATGTCTTGGACCAT
genomic: GATCTGTTACAAGTATTTGTTGCACTTGTTTCCTGATAAGATGTGCTTTGgtgagttcct ... tttaacgtagCTTGCACTTTCTGCATTTGATGAGAATTCAGATCTTGATGTCTTGGACCAT
EST: gi|163926925|gb|EH038506.1|EH038506
EST:     GATCTGTTACAAGTATTTGTTGCACTTGTTTCCTGATAAGATGTGCTTTG                         CTTGCACTTTCTGCATTTGATGAGAATTCAGATCTTGATGTCTTGGACCAT
genomic: GATCTGTTACAAGTATTTGTTGCACTTGTTTCCTGATAAGATGTGCTTTGgtgagttcct ... tttaacgtagCTTGCACTTTCTGCATTTGATGAGAATTCAGATCTTGATGTCTTGGACCAT
EST: gi|192307420|gb|FK000762.1|FK000762
EST:     GATCTGTTACAAGTATTTGTTGCACTTGTTTCCTGATAAGATGTGCTTTG                         CTTGCACTTTCTGCATTTGATGAGAATTCAGATCTTGATGTCTTGGACCAT
genomic: GATCTGTTACAAGTATTTGTTGCACTTGTTTCCTGATAAGATGTGCTTTGgtgagttcct ... tttaacgtagCTTGCACTTTCTGCATTTGATGAGAATTCAGATCTTGATGTCTTGGACCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtatttgaatatttttgttttctgaaaagattttgttttcacctttaacgtagCTTGCACTTTCTGCATTTGATGAGAATTCAGATCTTGATGTCTTGGACCATCCCATTCTTAACCTAATGTACTATTTG
                                            ctttaac  putative branch site (score: 3)
                                ttttgttttcaccttt  CT-rich tract
         aatatttttgttttct  TA-rich tract