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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtatcacatatatttcaagaaagatttttatccaaaaaaataaaatgtgtccaaactcatttttgatatgtgctaggcagtaaaatgttggtcaaattcagGTTGTTGCAGATACAAGGAGCTCTGAGGCTTTTGTTGCTCTTTGCTTGCTGACTGTTGCTGGGACTTCACTAGTCACACAGAATTTGGGATTTAGTGACA

Basic information

species Glycine max
transcript GLYMA08G06890.3
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G06890.1 (Glycine max), 3'ss of exon 9
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 3'ss of exon 9
-----------------------gtctgtatcacatatatttcaagaaagatttttatccaaaaaaataaaatgtgtccaaactcatttttgatat-gtgct-aggcagtaaaatgttggtcaaattcagGTTGTTGCAGATACAAGGAGCTCTGAGGCTTTTGTTGCTCTTTGCTTGCTGACTGTTGCTGGGACTTCACTAGTCACACAGAATTTGGGATTTAGTGACA
                       || || |  | |    || |    ||        |   | | | | ||    |  ||   |  | |||| |   ||||| |   | |||          | ||||||||||||||||| ||||| ||||| || |||||||| || |||||| | || || ||||||||||||||||| || || ||     | || || || || |
gtaacttatttcgtgtccttatagtttg-acaaaaccctttcctttgaatcccccctttttagagagtgaatacaggacactgttttatttggtgcagtgcttaaatactaagcccaaaacaatattcagGTTGTTGCAGAAACAAGAAGCTCAGAAGCTTTTGTGGCCCTTTGCCTTCTCACAGTTGCTGGGACTTCACTTGTGACTCAATGGCTTGGTTTCAGCGATA

upper sequence: GLYMA08G06890.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv00s0282g00020.t01 (Vitis vinifera), 3'ss of exon 9
gtctgtatcacatatatttcaagaaagatttttatccaaaaaaataaaatgtgtccaaactcatttttgatatgtgctaggcagtaaaatgttggtcaaattcagGTTGTTGCAGATACAAGGAGCTCTGAGGCTTTTGTTGCTCTTTGCTTGCTGACTGTTGCTGGGACTTCACTAGTCACACAGAATTTGGGATTTAGTGACA
            |||   |||       |||| | |||||  |     |  ||       | |  |     |      |   |      ||||| ||| || ||||||||||||||  ||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| || || ||||| ||||| || |||||||
-----------gtatgcatca----cttttttgaaccaaacgagctccaactgcatgt-tttacatcctgcagaaataaattaaggttttgttgatcatatccagGTTGTTGCAGAAGCAAGGAGTTCTGAAGCTTTTGTTGCTCTTTGCTTACTGACGGTTGCTGGGACTTCACTTGTTACCCAGAAGTTGGGCTTCAGTGACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtccaaactcatttttgatatgtgctaggcagtaaaatgttggtcaaattcagGTTGTTGCAGATACAAGGAGCTCTGAGGCTTTTGTTGCTCTTTGCTTGCTGACTGTTGCTGGGACTTCACTAGTCACACAGAATTTGGGATTTAGTGACA
              ttttgat  putative branch site (score: 4)
            atttttgatat  TA-rich tract