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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcacaattcttcgctcgtctacatatatccttttgtgtttcagtaccttaaatcattatgaaatcatggttacagATGAAGAAGGGTGCCAGTTGTCTTGGACAAGGCGTATGAAAATTATCATAGGCATTGCCCGTGGACTCAAGTATTTGCACACTGAAATTGAGCCGGCGTT

Basic information

species Glycine max
transcript GLYMA08G01640.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9203287|gb|BE329511.1|BE329511
EST:     GGTTTTTGAATATGCATCAAATGGAACACTTTATGAGCACCTACATTGTT                         ATGAAGAAGGGTGCCAGTTGTCTTGGACAAGGCGTATGAAAATTATCATAG
genomic: GGTTTTTGAATATGCATCAAATGGAACACTTTATGAGCACCTACATTGTTgtaagtcaca ... atggttacagATGAAGAAGGGTGCCAGTTGTCTTGGACAAGGCGTATGAAAATTATCATAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatatatccttttgtgtttcagtaccttaaatcattatgaaatcatggttacagATGAAGAAGGGTGCCAGTTGTCTTGGACAAGGCGTATGAAAATTATCATAGGCATTGCCCGTGGACTCAAGTATTTGCACACTGAAATTGAGCCGGCGTT
                           ttaaatcattatgaaa  TA-rich tract