1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acttctcttttgctttcagttttctactatcgaccaatgtagaaaatttctatataaatttagtttttttttttttgtgtgtatttactgtttcctgcagCTCACCATATCAGATATTAAACAAGAGATGGAGAAAACATTGCATTGGCTGGTTCCGATTGCTACAAACACGGCCAA
species | Glycine max |
transcript | GLYMA08G00670.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TAAAATTAGCCTTGCGTTCCAAATTACCAAGCTTTCATGTTGTAAAAGAG CTCACCATATCAGATATTAAACAAGAGATGGAGAAAACATTGCATTGGCTGEST: gi|193490853|gb|FK455978.1|FK455978
genomic: TAAAATTAGCCTTGCGTTCCAAATTACCAAGCTTTCATGTTGTAAAAGAGgtacagtctt ... tttcctgcagCTCACCATATCAGATATTAAACAAGAGATGGAGAAAACATTGCATTGGCTG
EST: TAAAATTAGCCTTGCGTTCCAAATTACCAAGCTTTCATGTTGTAAAAGAG CTCACCATATCAGATATTAAACAAGAGATGGAGAAAACATTGCATTGGCTGEST: gi|208194090|gb|GD989851.1|GD989851
genomic: TAAAATTAGCCTTGCGTTCCAAATTACCAAGCTTTCATGTTGTAAAAGAGgtacagtctt ... tttcctgcagCTCACCATATCAGATATTAAACAAGAGATGGAGAAAACATTGCATTGGCTG
EST: GCCTTGCGTTCCAAATTTACCTAAGCTTTTCATGTTGTAAAAGAG CTCACCATATCAGATATTAAACAAGAGATGGAGAAAACATTGCATTGGCTG
genomic: GCCTTGCGTTCCAAA-TTACC-AAGC-TTTCATGTTGTAAAAGAGgtacagtctt ... tttcctgcagCTCACCATATCAGATATTAAACAAGAGATGGAGAAAACATTGCATTGGCTG
atttctatataaatttagtttttttttttttgtgtgtatttactgtttcctgcagCTCACCATATCAGATATTAAACAAGAGATGGAGAAAACATTGCATTGGCTGGTTCCGATTGCTACAAACACGGCCAA
ctgtttcct CT-rich tract
tatataaatttagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttctcttttgctttcagttttctactatcgaccaatgtagaaaatttctatataaatttagtttttttttttttgtgtgtatttactgtttcctgcagCTCACCATATCAGATATTAAACAAGAGATGGAGAAAACATTGCATTGGCTGGTTCCGATTGCTACAAACACGGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - tgctttc
- - - - - - - - - - - - - - - - -ccaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtgta