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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaaaacctgtattttattttcttaagttatagtttatatccacttgctagtgtaactgtcttaccacagGGGAGTGAAATACCATGAACCAGAATACTGGAAGTTTGGAGAGGTGGGAAACAAGTACTTCCGTCATGCTACAGGACAATTATATGCCATTTCACAAGAT

Basic information

species Glycine max
transcript GLYMA07G39070.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G39070.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv10s0116g01710.t01 (Vitis vinifera), 3'ss of exon 8
gtaacaaaacc--tgtatttt---attttcttaagtt------atagtttatatccacttgctag-tgtaactgtcttaccacagGGGAGTGAAATACCATGAACCAGAATACTGGAAGTTTGGAGAGGTGGGAAACAAGTACTTCCGTCATGCTACAGGACAATTATATGCCATTTCACAAGAT
|||| || |       |||||   ||  ||| | | |      ||   ||||||     | |||  | | | | |  |   |||||||||| ||||||||||||||||| || ||||| ||||| |||| |||||||||||| ||||||||||||||||||||| ||||||| |||||| || ||
gtaagaagattgtcagatttttcaatcatctaagggttgaggaatcaattatatttggcttctaaatattaatttaatgaaacagGGGAGTCAAATACCATGAACCAGAGTATTGGAAATTTGGCGAGGAGGGAAACAAGTATTTCCGTCATGCTACAGGACAACTATATGCTATTTCAAAAAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttcttaagttatagtttatatccacttgctagtgtaactgtcttaccacagGGGAGTGAAATACCATGAACCAGAATACTGGAAGTTTGGAGAGGTGGGAAACAAGTACTTCCGTCATGCTACAGGACAATTATATGCCATTTCACAAGAT
                                           gtcttac  putative branch site (score: 3)
                                         ctgtctt  CT-rich tract
       ttaagttatagtttat  TA-rich tract