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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatgtgagaactaaagctgtagagttaaataatggtttttatggtaatattcttcaagcagaataccttctttcttaatcacaatttgatgtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTAGATGTTTTGGATCATCCTATTTTGGACTTGATTTATTTCATG

Basic information

species Glycine max
transcript GLYMA07G38920.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192310715|gb|FK001139.1|FK001139
EST:     GATCTGTCACAACCATCTGTTTCACGTGTTTTCTGATAAGATGCATTATG                         GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTAGATGTTTTGGATCAT
genomic: GATCTGTCACAACCATCTGTTTCACGTGTTTTCTGATAAGATGCATTATGgtaacttcaa ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTAGATGTTTTGGATCAT
EST: gi|31467919|gb|CD409947.1|CD409947
EST:     GATCTGTCACAACCATCTGTTTCACGTGTTTTCTGATAAGATGCATTATG                         GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTAGATGTTTTGGATCAT
genomic: GATCTGTCACAACCATCTGTTTCACGTGTTTTCTGATAAGATGCATTATGgtaacttcaa ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTAGATGTTTTGGATCAT
EST: gi|26268856|gb|CA819919.1|CA819919
EST:     GATCTGTCACAACCATCTGTTTCACGTGTTTTCTGATAAGATGCATTATG                         GGTTTTCTGTCTGCATTTGATTCAGATGCATCTCT
genomic: GATCTGTCACAACCATCTGTTTCACGTGTTTTCTGATAAGATGCATTATGgtaacttcaa ... gtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatattcttcaagcagaataccttctttcttaatcacaatttgatgtgcatgcagGGTTTTCTGTCTGCATTTGATTCAGATGCATCTCTAGATGTTTTGGATCATCCTATTTTGGACTTGATTTATTTCATG
                         tttcttaat  TA-rich tract