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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagggagctctgtaggtccaaatgtgtcaatggtctatactgcaataacatgcagtataactgcttgatttctctacagtgcaaatgaatttttcgtagaccatttaatttgctaaaaatttatatttcttcagATGGCATGGTCACGAGTAAAGATACGAGGTTTTCATCCATCACCTAGAGCTGGTTGTTGTGACGTCCTTTGTGGTACTAAATGGTATATCACTGGGGGTG

Basic information

species Glycine max
transcript GLYMA07G38020.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38020.1 (Glycine max), 3'ss of exon 9
lower sequence: AT5G18590.2 (Arabidopsis thaliana), 3'ss of exon 10
gtgagggagctctgtaggtccaaatgtgtcaatggtctatactgcaataacatgcagtataactgcttgatttctctacagtgcaaatgaatttttcgtagaccatttaatttgctaaaaatttatatttcttcagATGGCATGGTCACGAGTAAAGATACGAGGTTTTCATCCATCACCTAGAGCTGGTTGTTGTGACGTCCTTTGTGGTACTAAATGGTATATCACTGGGGGTG
                                |  |   || ||| |||  |||   | ||  |  ||| |||||  ||| || | ||    | ||     | |  ||  | |  | ||                ||||| ||||||| || |||||||| |||| ||||| |||||||| ||||| ||| ||||||  || ||||| ||||||||||||||||| || || || |
-------------------------------gtaatacttattgctata--atgttttttatttatttggtttcttgacattgaacat---ctctt-----atctcttggtgtcatcaa----------------gATGGTATGGTCAAGAATAAAGATAAGAGGATTTCACCCATCACCAAGAGCGGGTAGTTGTGGAGTTCTTTGCGGTACTAAATGGTATATAACCGGAGGAG

upper sequence: GLYMA07G38020.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 10
gtgagggagctctgtaggtccaaatgtgtcaatggtctatactgcaataacatgcagtataactgcttgatttctctacagtgcaaatgaatttttcgtagaccatttaatttgctaaaaatttatatttct-tcagATGGCATGGTCACGAGTAAAGATACGAGGTTTTCATCCATCACCTAGAGCTGGTTGTTGTGACGTCCTTTGTGGTACTAAATGGTATATCACTGGGGGTG
                        | |||  |    | || || |   |   |   ||  |||  ||| |||||  || | ||   |  | ||     |  |  | || ||||   | |  |  || ||| | |||||||  ||||||| || | ||||    | |      ||||||||||||||||||||||||||  ||  | ||||| ||||||||||||||  | |||||||
-----------------------gtttgtagagcaaccattcttctggagtttattgtcaaacaactttatttc--tataatgatgaaaacttacatcttcattagttgattt-tgatatgtggatttttgtctcagATGATATGGTCAAGAATTAAGAAGAAACGAGGATTTCCATCACCTAGAGCTGGTTGTTGTGGAGTTTTATGTGGAACTAAATGGTATATAGCAGGGGGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaaatgaatttttcgtagaccatttaatttgctaaaaatttatatttcttcagATGGCATGGTCACGAGTAAAGATACGAGGTTTTCATCCATCACCTAGAGCTGGTTGTTGTGACGTCCTTTGTGGTACTAAATGGTATATCACTGGGGGTG
                               tgctaaa  putative branch site (score: 2)
                                            tatttcttc  putative PPT
                       atttaatttgctaaaa  TA-rich tract