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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgactctttttatgcctttaattgccgattgttttcgtcttcaatgtgatttttaccttcccttctcactttcagGATGTTGTTCTGGCGAGAGTCTTGGATGAGGGTATTGGTGCAAATCTTAACTCCATAATACATTCAAACAATGCCCAT

Basic information

species Glycine max
transcript GLYMA07G37040.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G37040.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv05s0077g01200.t01 (Vitis vinifera), 3'ss of exon 11
gtttgactcttt--ttatgcctttaattgccgattgt----tttcgtcttcaatgtgatttttaccttcccttctcactttcagGATGTTGTTCTGGCGAGAGTCTTGGATGAGGGTATTGGTGCAAATCTTAACTCCATAATACATTCAAACAATGCCCAT
||||| ||||||     ||   ||  |||    |||     ||   | |  | ||| ||| |||||||   |   |  ||| ||||||| ||| || | |||||  ||||||||| ||  | |||||||||||| |||||||| |||||||| ||||||  |
gtttggctctttgacgctgaacttgtttgttacttgcctggttgtatttgtagtgtaattcttaccttatttcaacttttttagGATGTCGTTTTGCCTAGAGTGCTGGATGAGGCTACAGTTGCAAATCTTAATTCCATAATTCATTCAAATAATGCCGTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgccgattgttttcgtcttcaatgtgatttttaccttcccttctcactttcagGATGTTGTTCTGGCGAGAGTCTTGGATGAGGGTATTGGTGCAAATCTTAACTCCATAATACATTCAAACAATGCCCAT
                                          ttctcac  putative branch site (score: 2)
                          tgatttttaccttccc  CT-rich tract
                          tgattttta  TA-rich tract