1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaagtttctcattttatgtttttgaaataagtgaaacaaatctaacatttagatccattctctctgattgagtgaagattctgaagcagaaaaacatctctgatttctgtctcctcctttttttgcttcaatttccctgatttgagtaccttattgtctgtcacatggcattacaagGTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATATCAATCAAAGCAACTGTTGTGCTGATATGTTCATTG
species | Glycine max |
transcript | GLYMA07G36550.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACT GTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATAEST: gi|193513713|gb|FK467327.1|FK467327
genomic: ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTgtaagtttct ... gcattacaagGTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATA
EST: ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACT GTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATAEST: gi|17519074|gb|BM188116.1|BM188116
genomic: ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTgtaagtttct ... gcattacaagGTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATA
EST: ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACT GTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATAEST: gi|193516378|gb|FK476412.1|FK476412
genomic: ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTgtaagtttct ... gcattacaagGTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATA
EST: ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACT GTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATAEST: gi|193726520|gb|FK656180.1|FK656180
genomic: ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTgtaagtttct ... gcattacaagGTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATA
EST: ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACT GTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATA
genomic: ATCGCTACATATGGATAATTGGAATGATTTATGCTTATTATCATCCAACTgtaagtttct ... gcattacaagGTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATA
ttgcttcaatttccctgatttgagtaccttattgtctgtcacatggcattacaagGTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATATCAATCAAAGCAACTGTTGTGCTGATATGTTCATTG
ccctgat putative branch site (score: 4)
tcaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttctcattttatgtttttgaaataagtgaaacaaatctaacatttagatccattctctctgattgagtgaagattctgaagcagaaaaacatctctgatttctgtctcctcctttttttgcttcaatttccctgatttgagtaccttattgtctgtcacatggcattacaagGTTGAACGATGGATGGAAAAATTAGAGGAAGCAGAAATCAAGCGCAGAATATCAATCAAAGCAACTGTTGTGCTGATATGTTCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT