1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgttggcctgttatctacacttggctgcatagtttttcatgtaaatatattcatgtcttacagttttctgtttggcaattttgtcacgatatctcttcagTTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATGATATAGACACCTCTTCTGCCGATGTTGCTTATGAATCAACAAATACTAC
species | Glycine max |
transcript | GLYMA07G34890.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTTGTAGCACCTGCAACTGATGATCTAAAAGAGGACAATCAATTATCAT TTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATGEST: gi|16344356|gb|BI969951.1|BI969951
genomic: TTTTGTAGCACCTGCAACTGATGATCTAAAAGAGGACAATCAATTATCATgtaagttttc ... atctcttcagTTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATG
EST: TTTTGTAGCACCTGCAACTGATGATCTAAAAGAGGACAATCAATTATCAT TTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATGEST: gi|31459810|gb|CD401838.1|CD401838
genomic: TTTTGTAGCACCTGCAACTGATGATCTAAAAGAGGACAATCAATTATCATgtaagttttc ... atctcttcagTTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATG
EST: TTTTGTAGCACCTGCAACTGATGATCTAAAAGAGGACAATCAATTATCAT TTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATGEST: gi|7924180|gb|AW830206.1|AW830206
genomic: TTTTGTAGCACCTGCAACTGATGATCTAAAAGAGGACAATCAATTATCATgtaagttttc ... atctcttcagTTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATG
EST: TTTTGTAGCACCTGCAACTGATGATCTAAAAGAGGACAATCAATTATCAT TTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATG
genomic: TTTTGTAGCACCTGCAACTGATGATCTAAAAGAGGACAATCAATTATCATgtaagttttc ... atctcttcagTTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATG
tatattcatgtcttacagttttctgtttggcaattttgtcacgatatctcttcagTTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATGATATAGACACCTCTTCTGCCGATGTTGCTTATGAATCAACAAATACTAC
gtcttac putative branch site (score: 3)
tatctcttc putative PPT
aattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttggcctgttatctacacttggctgcatagtttttcatgtaaatatattcatgtcttacagttttctgtttggcaattttgtcacgatatctcttcagTTGAGGAATACGAGAGGTCATGGGAACAAAATGAAGAATTAGGTCTGAATGATATAGACACCTCTTCTGCCGATGTTGCTTATGAATCAACAAATACTAC
tgttggc
- - - - - - -tctacac
- - - - - - - - - - -tggctgc
- - - - - - - - - - - - - - - - - - -catgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - tcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcacg