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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggactttttatactgttcaagtgtttatcttctcgttgttttctgtcaagtttttccttcaacagaatcattttttttccttgcagAGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATATCTGTTTTTGACCAG

Basic information

species Glycine max
transcript GLYMA07G32480.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G32480.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv03s0017g01080.t01 (Vitis vinifera), 3'ss of exon 2
gtaaggactttttatactgttcaagtgtttatcttctcgttgttttctgtcaagtttttccttcaacagaatcattttttttccttgcagAGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATATCTGTTTTTGACCAG------------
||  | |    || |  || |    | ||| || |    | |||   | |  | ||||   ||||||  || |   |  |||||   |||||||||||||||| |||||| |||||||||||| |||||||| | |||||| || |||||||  ||            
gtg-gtatagattctgttggttttttatttctccttatttggttcattctatatttttctgttcaactaaagc-cctggtttccacacagagGGGTGCATCAAACAACAAGTTTCTCAACTATTTAAACAAACACATAATACCTATTTTTGATAAGGTAATACTTTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574959|gb|CX547934.1|CX547934
EST:     ATATTGACCGGTTGATATCTTGCCTTCACATGGCACTTCCATTTGTTGTG                         AGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATA
genomic: ATATTGACCGGTTGATATCTTGCCTTCACATGGCACTTCCATTTGTTGTGgtaaggactt ... ttccttgcagAGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATA
EST: gi|26058897|gb|CA801811.1|CA801811
EST:     ATATTGACCGGTTGATATCTTGCCTTCACATGGCACTTCCATTTGTTGTG                         AGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATA
genomic: ATATTGACCGGTTGATATCTTGCCTTCACATGGCACTTCCATTTGTTGTGgtaaggactt ... ttccttgcagAGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATA
EST: gi|58016932|gb|CX703674.1|CX703674
EST:     ATATTGACCGGTTGATATCTTGCCTTCACATGGCACTTCCATTTGTTGTG                         AGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATA
genomic: ATATTGACCGGTTGATATCTTGCCTTCACATGGCACTTCCATTTGTTGTGgtaaggactt ... ttccttgcagAGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcgttgttttctgtcaagtttttccttcaacagaatcattttttttccttgcagAGGGGTGCATCAAGCAACAAATTTCTCAACTATATAAACAAATATATAATATCTGTTTTTGACCAG
                                    tcattttttttccttg  CT-rich tract
                                agaatcatttttttt  TA-rich tract