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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatagattgtactttataatgtgcataagctctgcttcaaaaaactgtaagaaatctaatcatcttgatttcttctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTCAAAGGCAAATCCCTGAC

Basic information

species Glycine max
transcript GLYMA07G31090.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315267|gb|GR830260.1|GR830260
EST:     GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG                         CTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
genomic: GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTGgtaaatagat ... ctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
EST: gi|10255230|gb|BE822996.1|BE822996
EST:     NAATGNNNNTGCTTTGAAATTTNNNTGGTTTTTCCTGTTTTATCTG                         CTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
genomic: GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTGgtaaatagat ... ctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
EST: gi|23728768|gb|BU762445.1|BU762445
EST:     GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG                         CTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
genomic: GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTGgtaaatagat ... ctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
EST: gi|10255778|gb|BE823488.1|BE823488
EST:     GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG                         CTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
genomic: GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTGgtaaatagat ... ctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
EST: gi|6964344|gb|AW433037.1|AW433037
EST:     GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTG                         CTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTGTC
genomic: GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTGgtaaatagat ... ctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTC
EST: gi|13311994|gb|BG405645.1|BG405645
EST:     GAATGAAAGTGCTTTGAAATTTGGATGGTTNTTCCTGTTTTATCTG                         CTTCACATAAGATTCTGCATCTTAACTGCAGTTGCTCCTCCTATTAGTTTT
genomic: GAATGAAAGTGCTTTGAAATTTGGATGGTTTTTCCTGTTTTATCTGgtaaatagat ... ctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTAT-AGTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctgcttcaaaaaactgtaagaaatctaatcatcttgatttcttctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTCAAAGGCAAATCCCTGAC
                                 tcttgatttcttct  CT-rich tract
      ttcaaaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaatagattgtactttataatgtgcataagctctgcttcaaaaaactgtaagaaatctaatcatcttgatttcttctgcttacagCTTCACATAGGATTCTGCATCTTAGCTGCAGTTGCTCCTCCTATAGTTTTCAAAGGCAAATCCCTGAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC