1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gttttatagatattttatttataaatgcacacttttactatttattccataacttacatgctggaagctgagtggatgcatcttttcaccttgttactagGTTATACAGATCATCAGAAAACACCAATCAGCGGATACTGTTTGATATTGACCCTTCTGGAAAGTATCTTGGTACAGGTGGCCAG
species | Glycine max |
transcript | GLYMA07G30960.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCTTACATACTCTGCTGGGATGTGCGCAAATCTGTTGATTGTGTCTACAA GTTATACAGATCATCAGAAAACACCAATCAGCGGATACTGTTTGATATTGAEST: gi|209724272|gb|BW666614.1|BW666614
genomic: CCTTACATACTCTGCTGGGATGTGCGCAAATCTGTTGATTGTGTCTACAAgtacctactc ... ttgttactagGTTATACAGATCATCAGAAAACACCAATCAGCGGATACTGTTTGATATTGA
EST: TCTGCTGGGATGTGCGCAAATCTGTTGATTGTGTCTACAA GTTATACAGATCATCAGAAAACACCAATCAGCGGATACTGTTTGATATTGA
genomic: TCTGCTGGGATGTGCGCAAATCTGTTGATTGTGTCTACAAgtacctactc ... ttgttactagGTTATACAGATCATCAGAAAACACCAATCAGCGGATACTGTTTGATATTGA
tccataacttacatgctggaagctgagtggatgcatcttttcaccttgttactagGTTATACAGATCATCAGAAAACACCAATCAGCGGATACTGTTTGATATTGACCCTTCTGGAAAGTATCTTGGTACAGGTGGCCAG
aacttac putative branch site (score: 2)
tcttttcaccttgtt putative PPT
atctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttatagatattttatttataaatgcacacttttactatttattccataacttacatgctggaagctgagtggatgcatcttttcaccttgttactagGTTATACAGATCATCAGAAAACACCAATCAGCGGATACTGTTTGATATTGACCCTTCTGGAAAGTATCTTGGTACAGGTGGCCAG
- - - - - - - - - - - - -tgcacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatgca