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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagatttctctggttactaggactgtgagcaaggttaagtgttctatttagttattggacatcattatttactgttacatgaatgtctaaagtctaaaaacatgaattgcagcaaagtgtgatcttcactccatctgacactattttattcatccaacagGTTCAGAAGGTTGGAAAGGTTGCACGTGCAATATGTATTATGAGTCATCCTATTCCAGACACCAATGACTCTCACTCAGCACAAGTCATTCTGCCACAGA

Basic information

species Glycine max
transcript GLYMA07G30050.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G30050.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os03g16900.1 (Oryza sativa), 3'ss of exon 9
gttagatttctctggttactaggactgtgagcaaggttaagtgttctatttagttattggacatcattatttactgttacatgaatgtctaaagtctaaaaacatgaattgcagcaaagtgtgatcttcactccatctgacactattttattcatccaacagGTTCAGAAGGTTGGAAAGGTTGCACGTGCAATATGTATTATGAGTCATCCTATTCCAGACACCAATGACTCTCACTCAGCACAAGTCATTCTGCCACAGA
                                                                   |||||| |   |  |  |   || |  |  | | |      ||    |||  | || |  |   || |  | |     | | |   |   |||||||  |||||||||||| ||| || ||||||||||| || ||||  ||||| ||||| |||||||| || ||||| || |  ||  |||| || ||| |||
------------------------------------------------------------------gtattta-taccatttaga---ctcattttgagatattcaggtt----caatttatggtagtatatctacttaaattcctgtcaacaaatgaacagGTGAAGAAGGTTGGAAGGGTGGCGCGTGCAATATGCATAATGAAGCATCCGATTCCTGACACCAAGGATTCTCATTCCGTGCAGATCATCCTCCCAAAGA

upper sequence: GLYMA07G30050.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv03s0017g00490.t01 (Vitis vinifera), 3'ss of exon 8
gttagatttctctggttactaggactgtgagcaaggttaagtgttctatttagttattggacatcattattt----actgttacatgaatgtctaaagtctaaaaacatgaattgcagcaaagtgtgatcttcactccatctgacactattttattcatccaacagGTTCAGAAGGTTGGAAAGGTTGCACGTGCAATATGTATTATGAGTCATCCTATTCCAGACACCAATGACTCTCACTCAGCACAAGTCATTCTGCCACAGA
            |     | |  ||  |  |  | | |  |   || ||  ||||  |  ||    | |||     ||||| ||||     ||| ||  |  |||  | |  |   |  ||||||  |          || ||| | | || | |  ||  |||||||||| || || ||||| ||||||||||| |||||||| ||||| ||| | ||||||||||| ||||||||||||||||  || || ||||| ||||| |
-----------gtaacctcaaacaccttttgagatggtgtgaactccatgaagttgcttaactggttgattctgcaactgtgacattgcattctcaaacc--aaattaaggctccta--aaagtgaaaa---------atgtga-attgttat-taaatggaacagGTTCAAAAAGTCGGAAAAGTTGCACGTGCTATATGTATAATGAGCCATTCCATTCCAGACACAAATGACTCTCACTCAGTCCAGGTTATTCTTCCACAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgcagcaaagtgtgatcttcactccatctgacactattttattcatccaacagGTTCAGAAGGTTGGAAAGGTTGCACGTGCAATATGTATTATGAGTCATCCTATTCCAGACACCAATGACTCTCACTCAGCACAAGTCATTCTGCCACAGA
                           atctgac  putative branch site (score: 3)
                                      ttttattc  putative PPT
                                  actattttattcat  TA-rich tract