Sequence
atgc intronic sequence ATGC exonic sequence...gaactttttcagaatgcttgaatgtgatcatatagttagctattctgcaaatctgacaaggttttttctcttaatatttttcgttttgattatgttgtagATGTGGATGAGTGCAAAGAGAAATTGGTGTGCCAGTGCCCAGAGTGCCAATGCAAAAATACCTGGGGAAGTTATGAATGCACGTGTAGTGATGATTTGTT
Basic information
species | Glycine max |
transcript | GLYMA07G14800.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G14800.1 (Glycine max), 3'ss of exon 9
lower sequence: AT3G52850.1 (Arabidopsis thaliana), 3'ss of exon 9
gaactttttcagaatgcttgaatgtgatcatatagttagctattctgcaaatctgaca--aggttttttctcttaatatttttcgttttgatt--atgttgtagATGTGGATGAGTGCAAAGAGAAATTGGTGTGCCAGTGCCCAGAGTGCCAATGCAAAAATACCTGGGGAAGTTATGAATGCACGTGTAGTGATGATTTGTT
| |||| || | ||| ||| | | | | | || | || || |||| | ||| |||||||| |||| |||||||||| ||||||||||| ||| ||||||||||||||||||||| |||| ||||| || ||||||||||||||||||| || || | | |||| |
---tatcagtggaattttttattgtactcaatcaaagaagtgagatcattgttaaacgtcaaattcaaattcataatcatattc-ttttgattgaatgtgttagATGTGGACGAGTGCAAAGAAAAAACGGTGTGCCAGTGCCCAGAGTGTAAATGTAAAAACACTTGGGGAAGTTATGAATGCAGCTGCAGCAACGGTTTGCT
upper sequence: GLYMA07G14800.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv08s0058g01360.t01 (Vitis vinifera), 3'ss of exon 9
gaactttttcagaatgcttgaatgtgatcat--atagttagctattctgcaaatctgacaaggtttttt--ctcttaatatttttcgttttgattatgttgtagATGTGGATGAGTGCAAAGAGAAATTGGTGTGCCAGTGCCCAGAGTGCCAATGCAAAAATACCTGGGGAAGTTATGAATGCACGTGTAGTGATGATTTGTT
| | | || || || | |||| ||| | | | || | | | | | | ||| ||| | | || | | | || |||||||| | || ||||| || || | | ||| | || ||||||||| ||||||| |||||||||||||||||||| |||| || |||| |||| ||
---cgctagatgcat-ttttcatctcttcattcataaccaattctcctttgacattcatactgacagatggttctatgcattatcaatgtttactgttttatagATGTGAACGAATGCAAGGACAAGGTTGCCTGCAATTGTCCAGAGTGCAAATGCAAGAATACCTGGGGAAGTTATGAGTGCAGCTGCAGTGGCAATTTATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcaaatctgacaaggttttttctcttaatatttttcgttttgattatgttgtagATGTGGATGAGTGCAAAGAGAAATTGGTGTGCCAGTGCCCAGAGTGCCAATGCAAAAATACCTGGGGAAGTTATGAATGCACGTGTAGTGATGATTTGTT
ttaatatttttcgttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaactttttcagaatgcttgaatgtgatcatatagttagctattctgcaaatctgacaaggttttttctcttaatatttttcgttttgattatgttgtagATGTGGATGAGTGCAAAGAGAAATTGGTGTGCCAGTGCCCAGAGTGCCAATGCAAAAATACCTGGGGAAGTTATGAATGCACGTGTAGTGATGATTTGTT
- - - - - -gaatgct
- - - - - - - - - -gaatgtg
- - - - - - - - - - - - - - - - - - - - - ttctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgacaag