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gtatgcatttttcctggtttgtctctgggatagttgtgacttgtgagtgtatttgccattgttgttatctggtcactggtttccttaggtttccaaaagttattttttattcacaagttcgttttgcagTTGTTTTTATTGGATCAACCCTATTTGCTTTACAACAGCTATCTGGTATAAATGCTGTGTTTTATTTCTCTTCAACTGTTTTTAAAAGTGCTGGAGTGCC
species | Glycine max |
transcript | GLYMA07G09270.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TAGTGATAGTGTGAAGCTGTCGGAATTGCTTCATGGTCGTCATTCTAAAG TTGTTTTTATTGGATCAACCCTATTTGCTTTACAACAGCTATCTGGTATAAEST: gi|254339874|gb|GR857999.1|GR857999
genomic: TAGTGATAGTGTGAAGCTGTCGGAATTGCTTCATGGTCGTCATTCTAAAGgtatgcattt ... cgttttgcagTTGTTTTTATTGGATCAACCCTATTTGCTTTACAACAGCTATCTGGTATAA
EST: TAGTGATAGTGTGAAGCTGTCGGAATTGCTTCATGGTCGTCATTCTAAAG TTGTTTTTATTGGATCAACCCTATTTGCTTTACAACAGCTATCTGGTATAAEST: gi|17023662|gb|BM094696.1|BM094696
genomic: TAGTGATAGTGTGAAGCTGTCGGAATTGCTTCATGGTCGTCATTCTAAAGgtatgcattt ... cgttttgcagTTGTTTTTATTGGATCAACCCTATTTGCTTTACAACAGCTATCTGGTATAA
EST: TAGTGATAGTGTGAAGCTGTCGGAATTGCTTCATGGTCGTCATTCTAAAG TTGTTTTTATTGGATCAACCCTATTTGCTTTACAACAGCTATCTGGTATAAEST: gi|192333445|gb|FK023974.1|FK023974
genomic: TAGTGATAGTGTGAAGCTGTCGGAATTGCTTCATGGTCGTCATTCTAAAGgtatgcattt ... cgttttgcagTTGTTTTTATTGGATCAACCCTATTTGCTTTACAACAGCTATCTGGTATAA
EST: TAGTGATAGTGTGAAGCTGTCGGAATTGCTTCATGGTCGTCATTCTAAAG TTGTTTTTATTGGATCAACCCTATTTGCTTTACAACAGCTATCTGGTATAA
genomic: TAGTGATAGTGTGAAGCTGTCGGAATTGCTTCATGGTCGTCATTCTAAAGgtatgcattt ... cgttttgcagTTGTTTTTATTGGATCAACCCTATTTGCTTTACAACAGCTATCTGGTATAA
actggtttccttaggtttccaaaagttattttttattcacaagttcgttttgcagTTGTTTTTATTGGATCAACCCTATTTGCTTTACAACAGCTATCTGGTATAAATGCTGTGTTTTATTTCTCTTCAACTGTTTTTAAAAGTGCTGGAGTGCC
ttcgtttt CT-rich tract
tttccaaaagttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcatttttcctggtttgtctctgggatagttgtgacttgtgagtgtatttgccattgttgttatctggtcactggtttccttaggtttccaaaagttattttttattcacaagttcgttttgcagTTGTTTTTATTGGATCAACCCTATTTGCTTTACAACAGCTATCTGGTATAAATGCTGTGTTTTATTTCTCTTCAACTGTTTTTAAAAGTGCTGGAGTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA