1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaatgctatcttctggttgccaggatttaaatcaaagttattctgttattctattctctaatgctaacccccctccccccattttcttcagGATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG
species | Glycine max |
transcript | GLYMA07G09270.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTGCCATCAGACATTGCAAATGTCTGCATAGGAA-TGCCCAATTTGGCAG GATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTACEST: gi|192327720|gb|FK021355.1|FK021355
genomic: GTGCCATCAGACATTGCAAATGTCTGCATAGGAATTG-CCAATTTGGCAGgtaatgctat ... ttttcttcagGATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTAC
EST: AGTGCCATCAGACATTGCAAATGTCTGCATAGGAATTGCCAATTTGGCAG GATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTACEST: gi|15812889|gb|BI785164.1|BI785164
genomic: AGTGCCATCAGACATTGCAAATGTCTGCATAGGAATTGCCAATTTGGCAGgtaatgctat ... ttttcttcagGATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTAC
EST: AGTGCCATCAGACATTGCAAATGTCTGCATAGGAATTGCCAATTTGGCAG GATCTATCGTTTCAATGGGTTTGATGGATAAGCTEST: gi|151399677|gb|EV269548.1|EV269548
genomic: AGTGCCATCAGACATTGCAAATGTCTGCATAGGAATTGCCAATTTGGCAGgtaatgctat ... ttttcttcagGATCTATCGTTTCAATGGGTTTGATGGATAAGCT
EST: CTGCATAGGAATTGCCAATTTGGCAG GATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTAC
genomic: CTGCATAGGAATTGCCAATTTGGCAGgtaatgctat ... ttttcttcagGATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTAC
gttattctgttattctattctctaatgctaacccccctccccccattttcttcagGATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG
tgctaac putative branch site (score: 1)
tgctaacccccctccc CT-rich tract
ttattctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgctatcttctggttgccaggatttaaatcaaagttattctgttattctattctctaatgctaacccccctccccccattttcttcagGATCTATCGTTTCAATGGGTTTGATGGATAAGCTTGGAAGGAAGGTTCTACTTTTCTGGAGTTTCTTTGGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA