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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatggaactgatcttatttagaaaaggcttggttgttgctgttgcctttttgttgattttttttaatgagtttgtttttttttttttaaattattgcagGAAAAATGCTAGGATGTTTTTCTGGAAAATGCTCTGGAAGCATCAGATCCATAGTCAAGCACCCTGAGCTACCTGTAATAGCTTCTTGTG

Basic information

species Glycine max
transcript GLYMA07G07430.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G07430.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv02s0012g01780.t01 (Vitis vinifera), 3'ss of exon 8
---tcatggaactgatcttatttagaaaaggcttggttgttgctgttgcctttttgttgattt--tttttaatgagtttgtttttttttttttaaattattgcagGAAAAATGCTAGGATGTTTTTCTGGAAAATGCTCTGGAAGCATCAGATCCATAGTCAAGCACCCTGAGCTACCTGTAATAGCTTCTTGTG
   |       ||||  ||   ||  |  |||  | ||||||   |    ||||   || | |    ||| ||   |||||||  ||  ||||    ||| ||||| ||| || ||||||| ||||  ||||| || ||||||||||| |||||||||| || ||| || ||||| ||||| ||||| || ||||
tactttccattctgaaatt-cgtatcattggca-gattgttgaactcaatttttaagtgctctaaccttttatctttttgtttggttgcttttgg--tat-gcagGGAAATTGTTAGGATGCTTTTTGGGAAAGTGTTCTGGAAGCATTAGATCCATAGCCAGGCATCCAGAGCTCCCTGTGATAGCATCATGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttttgttgattttttttaatgagtttgtttttttttttttaaattattgcagGAAAAATGCTAGGATGTTTTTCTGGAAAATGCTCTGGAAGCATCAGATCCATAGTCAAGCACCCTGAGCTACCTGTAATAGCTTCTTGTG
                ttttaat  putative branch site (score: 3)
           attttttttaatgagt  TA-rich tract