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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatgcttgaatctatctgaaaatttctgctattgctttttagtttttagactgaagttctagtgttgatttaacaaagatacctttgttttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGGAGAAATCTTGAGGTGAGGCGAGTTGCATGTTTCACATTAATTGTTAGGT

Basic information

species Glycine max
transcript GLYMA07G06230.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208327607|gb|GE124131.1|GE124131
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|207820415|gb|GD792869.1|GD792869
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|193385173|gb|FK352327.1|FK352327
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCGTGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|208242168|gb|GE042370.1|GE042370
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|193415372|gb|FK380192.1|FK380192
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGGCTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|12689880|gb|BG156216.1|BG156216
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|208108701|gb|GD907133.1|GD907133
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|208260386|gb|GE058512.1|GE058512
EST:     GCCATCTGATTCAGACA-TTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|207719843|gb|GD701698.1|GD701698
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|6913615|gb|AW395145.1|AW395145
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|7796003|gb|AW781400.1|AW781400
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGG
EST: gi|193314343|gb|FK280144.1|FK280144
EST:     GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAG                         TGGATGACTTCTTTGTTAATTCTGAGC
genomic: GCCATCTGATTCAGACATTTTGCTAGAATCTCCTGATCAACAGGATATAGgtaatgttaa ... ttcatttcagTGGATGACTTCTTTGTTAATTCTGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagactgaagttctagtgttgatttaacaaagatacctttgttttcatttcagTGGATGACTTCTTTGTTAATTCTGAGCCCCCATGCTCTCAATCAGATGAGGAGAAATCTTGAGGTGAGGCGAGTTGCATGTTTCACATTAATTGTTAGGT
                       atttaac  putative branch site (score: 3)
 cctttgttttcatttc  putative PPT
 atttaacaaagata  TA-rich tract